Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702545
.1_202016-08-10] 3,866 sequences; 57,435,926 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq3504 376 5e-99
seq380 327 2e-84
>seq3504
Length=162315
Score = 376 bits (416), Expect = 5e-99
Identities = 601/849 (71%), Gaps = 24/849 (3%)
Strand=Plus/Minus
Query 42309 ATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGAC 42368
|||||||||||||| || ||| |||||| || ||||||||||| || |||||||
Sbjct 155457 ATGTACAAGAAGGCTGAGGCTTCCTTCTGGACTGCTGAGGAGATTGATCTTTCCAAGGAT 155398
Query 42369 ACGGCCGGCTGGGAGTCA-----CTGTCTGAGAACGAAAAGTTTTTCCTCAAAAACATAC 42423
| |||| | || ||| ||| | || |||| ||| || |||| |
Sbjct 155397 CTCCATGACTGGAA--CAACCGCCTGACTGCCGATGAGCAGTTCTTCGTCTCTCACATCC 155340
Query 42424 TGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGA 42483
| || || ||||| |||||||| || || ||||| |||||||| | | | ||||
Sbjct 155339 TTGCTTTTTTCGCTGCCTCTGATGGTATTGTCAACGAGAACCTCGTCGAGCGATTCAGTG 155280
Query 42484 AAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACG 42543
||||| ||| | ||||| || |||||||||||||||||||| || ||||||
Sbjct 155279 GCGAGGTCCAGATCCCCGAGGCTCGTTGCTTCTACGGCTTCCAGATCATGATGGAGAACA 155220
Query 42544 TGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCCCGTCGAGC 42600
| ||||| ||| ||| || ||||||| |||| |||||| ||| |||| | |||
Sbjct 155219 TCCACTCCGAGACCTACTCC---CTGCTCATTGACACCTACATCAAGGAGCCCGCCCAGC 155163
Query 42601 GTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGG 42660
| | | || || || ||||| ||||| || ||||||||| |||||||| |||||||
Sbjct 155162 GAACCTACCTCTTTAACGCCATTGAGACCATCCCCTGCATCCGAAAGAAGGCCGACTGGG 155103
Query 42661 CGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCG 42720
| || |||||| || | ||| | | || | | || | || || || || | |
Sbjct 155102 CCATCCGATGGATCCAGGATAAGGACTCCTCCTTTGCCCAGCGTCTCGTTGCTTTCGCTG 155043
Query 42721 CCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAA-G 42779
| || ||||| ||||||||| || ||||||||||| ||||||||||||||| || |
Sbjct 155042 CTGTTGAGGGTATCTTCTTCAGTGGTGCCTTCGCCTCTATCTTCTGGCTCAAGAAGCGTG 154983
Query 42780 GTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCAT 42839
|| || |||||||| || |||||||| ||||| |||||| | || ||||| || ||
Sbjct 154982 GTCTC-ATGCCCGGTCTGACCTTCTCCAACGAGCTCATCTCTCGTGATGAGGGTCTTCAC 154924
Query 42840 AGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTC-AGGCACAAGCCCTCGAAGGAGCG 42898
| ||||||||||||||||| ||| |||||| ||| | ||| | ||| ||
Sbjct 154923 ACTGACTTTGCCTGCCTCCTCCACTC---TCACCTCAAGGGTCGTGCCAGC-AAGCAGAT 154868
Query 42899 GGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCT 42958
| ||| || ||||| || || ||||| ||| ||| ||||||||||||| || | ||
Sbjct 154867 GATCCAGGATATCATTACTGATGCCGTCACGATTGAGCAGGAGTTCCTCACTGAGGCTCT 154808
Query 42959 GCCC-GTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCG 43017
||| ||| |||| ||||||||||| ||||||||| ||||||| ||| |||||
Sbjct 154807 TCCCTGTG-CCCTTCTCGGCATGAACTCTGACCTCATGAAGCAGTACATTGAGTTCGTCG 154749
Query 43018 CCGACCATCTCC-TGTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTC 43076
| || | ||||| ||| | ||| || | | ||||| | | |||||||
Sbjct 154748 CTGATCGTCTCCTTGTCGCGCTTGGCAACGAGAAG-GTTTACAAGGCCACCAACCCCTTC 154690
Query 43077 GACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCC 43136
||||| |||||||||||||| | | |||||||||||||| ||||||||||| || |||
Sbjct 154689 GACTTCATGGAGAACATCTCCCTTGGTGGCAAGACCAACTTCTTCGAGAAGCGTGTTGCC 154630
Query 43137 GACTACCAG 43145
|||||||||
Sbjct 154629 GACTACCAG 154621
>seq380
Length=2124523
Score = 327 bits (362), Expect = 2e-84
Identities = 896/1358 (66%), Gaps = 41/1358 (3%)
Strand=Plus/Plus
Query 244090 GTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGG 244149
||| || ||||| ||||| || | || || || || ||||||| |||| | || ||
Sbjct 1304878 GTTGACAACCTGGAACTCACCAGCGAGAACACGTCGTTGGTAGATGTTGGAGGTGTAGGG 1304937
Query 244150 CTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACAC 244209
||||| || ||| |||||||||| ||||| | || || ||||| ||||| || | |
Sbjct 1304938 CTCGAAGCACTCGTTGTTGCCCAGAATCTGGGAGGTACTGGCAGTAGGCATAGGAGCAAG 1304997
Query 244210 CAGCAGACTGTTCCTCACGCCGTGCCTCTGGA-TGCGGAGTCTGAGCTCGTTCCAGTCCC 244268
||||||||||| | | |||||| ||| || | | || |||| |||| |
Sbjct 1304998 GAGCAGACTGTTACGGATGCCGTGTGTCTTGACTTC-----CT---CTCGAAG-AGTCTC 1305048
Query 244269 ACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGC 244328
|| ||| ||||||| | | |||| | ||||||||| ||||| || | ||||
Sbjct 1305049 CCAGTCCC-AGAGGTCAGAGGGCTTGACGTTCCACATGTCGAACTGGAGGATACCCTCAG 1305107
Query 244329 TGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTT-ACAGCTC 244387
| ||||| || | | |||| | ||||||||| || || ||||||| || |
Sbjct 1305108 AGGCGGGGGAACCTTTGAAGGTGGAGTAGGGACCCTCCTCCTTAGCCAGCTGCACGGAGG 1305167
Query 244388 TCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTG 244447
|| |||||| |||| ||| ||||||||||||||| |||||| | || || |||| |
Sbjct 1305168 CAGT-GAGGGCAGCGTGGTAAATGGTCTCGAAGATCTGCTTGTTGAGCTCACGAGCCTCG 1305226
Query 244448 CCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATG 244507
| |||||| |||| || | ||| | ||||| || ||||| || || |
Sbjct 1305227 GGTGACTCGAAGGGCATGCGCAGAGCAAGGAAAGCATCGGCAAGGCCCTGAACACCAAGA 1305286
Query 244508 CCGATGGGTCTGTGTCGCTTGTTGGAGC-GCATGGCTTCGGGCACGGGGTAAAAGTTGCC 244566
|| ||||||| ||| ||| |||| | || | || | || || ||||| ||| |
Sbjct 1305287 CCAATGGGTCGGTGGCGCATGTTACTGTTGCGAGCCTCCTGG-ACAGGGTAGTGGTTCAC 1305345
Query 244567 GTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGAC-GACGTCGGCCAGCAGCTGAA 244625
||||| | |||||| |||||||| | | || | ||| ||| | | || | || |
Sbjct 1305346 ATCGATGATCTTGTTCAGGTTGCGAATAA-CAACCTGACTGACCTTGTGCAACTTCTTGA 1305404
Query 244626 AGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGC 244685
||||||| | | |||| || | |||| || | || || |
Sbjct 1305405 AGTCGTA------GCAAGCCTCATCGTAGTTGATG------AAAGAGGGCAGAGCCAGAG 1305452
Query 244686 TGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGA 244745
||| ||||||||||| || ||||| || | | ||||| | ||| || ||||| |
Sbjct 1305453 AGGCAAGGTTGCAGACAGCGACCTCGTCAGGGGCACAGTACTCAATAATTTCAGTGCACA 1305512
Query 244746 GGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCT 244805
|||| || |||||| || |||| || || ||| |||| ||||||||| ||||
Sbjct 1305513 GGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGGCATCCT 1305572
Query 244806 TGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGT 244865
||||||||||||| || |||||||| |||||| | || | | || ||| || |
Sbjct 1305573 TGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCCTCAAGAATGGCGTACCAAAGTT 1305632
Query 244866 CCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCT 244925
| |||||||| ||| ||||| |||||||||| |||||| |||||| ||||
Sbjct 1305633 TCTGAGCCTTGATAGTCTTGCGACCCTTGCCCTCCTTCTCGTACTTTTCGTACAGAGCCT 1305692
Query 244926 CGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCC 244985
||||||| || || ||| | ||||| |||||| |||||||| || |||
Sbjct 1305693 CGAACTCCTCTCCGTAGCAGTCGGCGAGGCCAGGGCACTCGTTGGGGCACATCAGCGTCC 1305752
Query 244986 ACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGA 245045
| |||||| | | || | || |||||| || || |||||||| ||||| |||| |
Sbjct 1305753 AGTCGCCGTTCTTTTCAACACGCTTCATGAAAAGATCAGGGATCCAAAGGGCGAGGAAAA 1305812
Query 245046 GGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGA 245105
|||| | || | ||| || || |||||| | || || | || || ||||
Sbjct 1305813 GGTCACGGGCACGGACCTCCTCTTTACCGTGGTTCTTACGGAGATCAAGGAACTCGAAGA 1305872
Query 245106 CGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCT 245165
| || |||||| ||||| | ||||| || | || ||||| ||||||||||| ||||
Sbjct 1305873 CATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTCGCTTGTTGCCACCCT 1305932
Query 245166 GGTCCACCATCCTCTCGAGC----GCGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTA 245221
|||| | | | ||||| |||||||| || || |||| || | |||||
Sbjct 1305933 GGTCGA----CATAGCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAACACCGTTC 1305988
Query 245222 GAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTG--AGGTTGCTGATGGACA 245279
|| |||||||| || ||| |||| ||| | | | | | | ||| | | ||
Sbjct 1305989 GATGTACCGTTGGTACCGGCGATATAGGAGCCAGTAGCACGGATACGGTGC--ACGTTCA 1306046
Query 245280 TGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGC 245339
|| | || || || ||||||||| | ||| ||| |||||| || || || |
Sbjct 1306047 GACCAATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCGTAGATTC 1306106
Query 245340 CCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGC 245399
|||| || ||||| |||||| | | || ||||| || |||| ||||||| |||
Sbjct 1306107 CCTCAATACTGTCGTCCTTCATATCAACCAAGAAGCAAGATGACAATTGGGGCTGAGGGG 1306166
Query 245400 TGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAG 245437
||| | |||||| || ||||| ||| || || |||
Sbjct 1306167 TGCCGGCGTTGAAGAGCGTGGGAGAGGCATGTGTGAAG 1306204
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 944293564808160
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