Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702545 .1_202016-08-10] 3,866 sequences; 57,435,926 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq3504 116 8e-21 seq602 104 5e-17 >seq3504 Length=162315 Score = 116 bits (128), Expect = 8e-21 Identities = 135/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 243544 GACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAA 243603 || ||| |||| || ||| | |||||||||||||| |||||| |||||||| || Sbjct 154815 GAGGCTCTTCCCTGTGCCCTTCTCGGCATGAACTCTGACCTCATGAAGCAGTACATTGAG 154756 Query 243604 TTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAAC 243663 ||||| || || || | | |||||||||| | ||||| || ||||| ||| ||| Sbjct 154755 TTCGTCGCTGATCGTCTCCTTGTCGCGCTTGGCAACGAGAAGGTTTACAAGGCCACCAAC 154696 Query 243664 CCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGT 243723 ||||| | ||| |||||| ||| || ||| || || || ||||||||||| |||||| Sbjct 154695 CCCTTCGACTTCATGGAGAACATCTCCCTTGGTGGCAAGACCAACTTCTTCGAGAAGCGT 154636 Query 243724 GT 243725 || Sbjct 154635 GT 154634 >seq602 Length=214310 Score = 104 bits (114), Expect = 5e-17 Identities = 175/251 (70%), Gaps = 2/251 (1%) Strand=Plus/Minus Query 334105 AGTCAATGATAGCCATGTTAGAATCGGACCCGTCGAGATCGTGTTCCACGTAAGCAGTTT 334164 |||||||| | | ||| | || ||||| ||| || ||||| || ||| | |||| | Sbjct 40721 AGTCAATGGTGGTCATCTCAGTATCGGCGGAGTCAAGGTCGTGCTCGACGAAGACAGTCT 40662 Query 334165 TCAAAACA-TCCGCAGAGGGGAACCCTTCAAGCTGACCGTTCACAATAGCGCGCATCAGA 334223 | | | || || |||| |||||| ||| ||| |||| || |||||||| ||| Sbjct 40661 TGACCTCGCTCTGCTTAGGGAAACCCT-CAACCTGCTCGTTGTTGATGGCGCGCATGAGA 40603 Query 334224 GTTGATTTACCCGCCCCGTTTGGCCCACACAGACCGTAGCGGTTTCCACGCTTCAGATTG 334283 || || || || | ||||| || || || |||||||| || | |||||||| ||| | Sbjct 40602 GTGGACTTTCCGGAACCGTTGGGACCGCAAAGACCGTAACGCTGACCACGCTTGAGACGG 40543 Query 334284 AACCGCGTATTGTTCAGAAGAATTTTTCCACCATATGCCAGAGAAAATTCACAATCACAC 334343 | | || | ||| |||||||| || |||| || || ||||| || ||| | || Sbjct 40542 AGGTGAGTCTGGTTGAGAAGAATCTTGGCACCGTAGGCAAGAGAGAAGGTACAGTTGCAA 40483 Query 334344 AGATCCTCACC 334354 ||||||||||| Sbjct 40482 AGATCCTCACC 40472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102825370907100