Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702545
.1_202016-08-10] 3,866 sequences; 57,435,926 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq2156 104 3e-17
seq2989 96.9 4e-15
seq2756 87.8 2e-12
>seq2156
Length=308415
Score = 104 bits (114), Expect = 3e-17
Identities = 142/196 (72%), Gaps = 2/196 (1%)
Strand=Plus/Plus
Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076
|||||| || || ||||| || ||| || || | || || |||||||| ||||| ||
Sbjct 277288 CTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGTCCATCCTCGAGCTGCTTGCCAGCAAA 277347
Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136
||||||||||||||||| | || | || |||||||||| ||| || |||| |||
Sbjct 277348 GATGAGTCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGT 277406
Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195
| | | |||||| || ||||| || | ||||| || || ||||| || ||||| |
Sbjct 277407 TGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGA 277466
Query 42196 CAAAGATTTGCATTTT 42211
| || || ||||| ||
Sbjct 277467 CGAAAATCTGCATCTT 277482
>seq2989
Length=476821
Score = 96.9 bits (106), Expect = 4e-15
Identities = 130/181 (72%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 42019 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 42078
|||| || || ||||| || | ||||| || | || || ||||||||||||||||| |
Sbjct 331119 CCTTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCGAGCTGCTTACCAGCGAAGA 331178
Query 42079 TGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 42138
| |||||||| ||||| | || | || |||||||||| ||| || |||| |
Sbjct 331179 TCAGTCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 331238
Query 42139 CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAA 42198
| | ||||| || || || |||| |||||||| |||||||| || ||||| || |
Sbjct 331239 CGATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGA 331298
Query 42199 A 42199
|
Sbjct 331299 A 331299
>seq2756
Length=1201414
Score = 87.8 bits (96), Expect = 2e-12
Identities = 129/180 (72%), Gaps = 2/180 (1%)
Strand=Plus/Minus
Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077
||||| ||||| ||||| || || || || || | || || || ||||| ||||| ||
Sbjct 797340 TCCTTCTGAATGTTGTAGTCGGCAAGGGTTCGGCCATCTTCGAGTTGCTTTCCAGCAAAG 797281
Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137
|| || ||||||||||| | || | || |||||||||| ||| | |||| | | | |
Sbjct 797280 ATCAGACGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCC-TGAATCTTTGACTTAACATT 797222
Query 42138 G-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196
| | | || ||| ||| || || || | |||||||| ||||| || || ||||| ||
Sbjct 797221 GTCGATGGTATCGGACGACTCGACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTGAC 797162
Score = 87.8 bits (96), Expect = 2e-12
Identities = 134/191 (70%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077
||||| ||||| ||||| || | ||||| || | || || || ||||| ||||||||
Sbjct 797568 TCCTTCTGAATGTTGTAGTCGGAAAGAGTTCGGCCATCTTCAAGTTGCTTGCCAGCGAAG 797509
Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137
||||||||||| || |||| || | | |||||||||| ||| || || | |
Sbjct 797508 ATGAGTCGCTGTTGATCGGGAGGAATACCCTCCTTGTCCTGGATCTTGCTCTTCACATTA 797449
Query 42138 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 42197
| | || ||| || || || || | || ||||| || || || || ||||| ||
Sbjct 797448 TCAATGGTATCGGATGACTCGACTTCCAGAGTAATGGTCTTTCCAGTGAGGGTCTTGACG 797389
Query 42198 AAGATTTGCAT 42208
|||||||||||
Sbjct 797388 AAGATTTGCAT 797378
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 543186549241440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |