Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702545 .1_202016-08-10] 3,866 sequences; 57,435,926 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq3657 242 5e-59 seq1346 93.3 5e-14 >seq3657 Length=4224935 Score = 242 bits (268), Expect = 5e-59 Identities = 432/629 (69%), Gaps = 6/629 (1%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| || |||||||||||||| || || || ||||| | ||||| || |||||||| Sbjct 1686798 TCGAAGTCCTCACCACCCAAGTGAGTGTCACCGGCGGTAGACTTGACCTCGAAGATACCC 1686739 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | |||||| | | | |||||||| || ||||||||||| || || || ||||| ||| Sbjct 1686738 TCCTCAATGGTAAGGAGAGAAACATCGAAGGTACCACCACCAAGATCGAAGATGAGGACG 1686679 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 || ||| | || ||||| || |||||||| || || || || || || || || Sbjct 1686678 TTGCGCTCGCCCTCGACCTTCTTGTCAAGACCGTAGGCAATGGCGGCAGCAGTAGGCTCG 1686619 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 || || || || ||| ||| || || || || | ||||| || || ||||| || Sbjct 1686618 TTGATGATTCGGAGAACGTTGAGACCGGCGATGAGACCAGCATCCTTGGTAGCTTGACGC 1686559 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756 || |||||||| |||||||| ||||| || || || |||| |||| ||| ||||| Sbjct 1686558 TGAGAATCGTTGAAGTAGGCGGGGACAGTAACAACAGCGTTGTTGACAGTCTCGCCGAGG 1686499 Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCA 7816 || || || ||| | || ||| ||||| || | ||| | || ||||| || | | Sbjct 1686498 TAAGACTCAGCGGTCTCACGCATCTTGGTGAGGATCATGGCGGAGATCTCCTCGGGGGTG 1686439 Query 7817 AACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGG 7876 || || || || || || || ||||| || || |||| ||| || | | | Sbjct 1686438 AAGGTCTTGGTCTCGCCCTTGAACTCAACCTCGATGTTGGGCTTA---CCACCCTTGTCG 1686382 Query 7877 ATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTT 7936 | | ||| | | | | ||||| ||| | ||||||| | || | ||||| | Sbjct 1686381 ACGATCTTGAAGGGGAAGTGCTTCATGTCGGCCTGGACCTCAGGATCGGCGAACTTGCGA 1686322 Query 7937 CCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTC 7996 ||||| | ||||| || || || || ||||| | |||||||||||| ||||||||| Sbjct 1686321 CCGATCAATCGCTTGGCGTCGAAGACAGTGTTCTGGGGGTTCATGGCGACTTGGTTCTTG 1686262 Query 7997 GCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTT 8056 || || || || || ||||| || | || || || ||||| | || ||||| ||| Sbjct 1686261 GCGGCATCACCAATCAGACGCTC---GGTGTCGGTGAAACCGACGAATGAGGGGGTAGTT 1686205 Query 8057 CGATTCCCTTGGTCGTTCGCAATAATTTC 8085 || || || |||||||| || || || || Sbjct 1686204 CGGTTACCCTGGTCGTTGGCGATGATATC 1686176 Score = 163 bits (180), Expect = 4e-35 Identities = 367/545 (67%), Gaps = 15/545 (3%) Strand=Plus/Plus Query 7244 AGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAA 7303 || ||||| ||||| || ||||| ||||| | ||| || | |||||| | | || Sbjct 1377233 AGGTCCTCGAAACGGGCGCGGGTGATGGACATGGTGAAGTCCTCACCGTCGAAGAGAGAG 1377292 Query 7304 TCAATTTCAATGGTTGTTTGTGC--CGTCGAAGATAACGTTCGCTTTGCGCGCTCACACG 7361 ||||| |||||||| | || || || | ||| | || ||||| || |||||||| | Sbjct 1377293 TCAATCTCAATGGTGGCCTGGGCACCGCTGGAGAGA--GTACGCTTGGCACGCTCACAAG 1377350 Query 7362 CCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTT 7421 | ||||| | ||| || |||||||| | | || || | || ||||| || || Sbjct 1377351 CAGTTCGGAGACGTCGGAGGGCACGGGCATCGCCAGAGAGGTCCTTCTTCGTCTTTCGGC 1377410 Query 7422 TAAACTCTTCAGAGAAGTG-TCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGT 7480 ||||| | | |||| |||| |||| | | |||||||| | ||||||||||| Sbjct 1377411 CGAACTCCTTCTTGCAGTGGTCGA-GGAGGTTGGTGTCGAAATCCTGTCCACCCAAGTGG 1377469 Query 7481 GTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACA 7540 || || || ||||| || ||||| |||| ||| || | ||||| | | || ||| Sbjct 1377470 GTGTCACCAGCGGTAGCCTTGACGGTGAAGACACCACCCTGGATGTTGAGGAGGGAGACA 1377529 Query 7541 TCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTA 7600 || || ||||||||||| || || | ||||| ||||| || | ||| | |||| Sbjct 1377530 TCGAAAGTACCACCACCGAGATCGTAGATGAGAACGTTGCGCTC--CTTCTCAG-ACTTA 1377586 Query 7601 TCG------AGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAG 7654 || |||||||| || || || || || || || || || || ||||| || | Sbjct 1377587 CCGGCACCAAGACCGTAGGCAATGGCGGCGGCAGTAGGCTCGTTGATGATACGGAGGACG 1377646 Query 7655 TTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAG 7714 || || || ||||| | | || || || || || || || || ||||| |||||| Sbjct 1377647 TTGAGACCGGCAATGGAACCGGCGTCCTTGGTGGCCTGACGCTGGTTGTCGTTGAAGTAG 1377706 Query 7715 GCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCT 7774 || ||||| || | ||| || | | ||| ||||| ||||| | | || || || || Sbjct 1377707 GCAGGGACAGTGATGACAGCCTTCTCGACCTTCTTGCCGAGCTTGGTCTCGGCAATCTCC 1377766 Query 7775 TTCAT 7779 ||||| Sbjct 1377767 TTCAT 1377771 >seq1346 Length=329643 Score = 93.3 bits (102), Expect = 5e-14 Identities = 169/244 (69%), Gaps = 5/244 (2%) Strand=Plus/Plus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 ||||||||| |||||||| | || || || || ||||| || ||| || |||||||| Sbjct 245071 ATCGAAATCCTCACCACCGAGATGGGTGTCACCAGCGGTAGCCAGGACCTCGAAGATACC 245130 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575 | |||||| | | || ||||| || ||||||||||| || || | || | Sbjct 245131 GTCATCAATGGAGAGAAGGGAGACATCGAAGGTACCACCACCGAGATCGTA---GACGAT 245187 Query 7576 GTTCGTATCG-TCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTT 7634 | || | ||| || | | | |||| || |||||||| |||||||| || || || || | Sbjct 245188 GATC-TGTCGCTCACCGTCGGTCTTGTCAAGACCGTAGGCGATAGCGGCGGCGGTGGGCT 245246 Query 7635 CATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTC 7694 | || | || || ||| ||| || || ||||| | | ||||| || || || |||| Sbjct 245247 CGTTGACGATTCGGAGAACGTTGAGACCGGCAATGATACCGGCATCCTTGGTGGCCTGTC 245306 Query 7695 GTTG 7698 | || Sbjct 245307 GCTG 245310 Score = 86.0 bits (94), Expect = 8e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 7704 CGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATT 7763 |||| |||||||| ||||| || ||||| |||| ||||| ||||||||||| || | Sbjct 245371 CGTTGAAGTAGGCAGGGACGGTGACGACGGCGTGGGTGACCTTCTTACCGAGGTAGCCCT 245430 Query 7764 CCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTT 7823 | |||| || ||||| ||| ||||||||| | || ||||| |||| | ||||| | Sbjct 245431 CGGCGACCTCCTTCATCTTGCCAAGAACCATAGCAGAGATCTCCTCAGGAGTGAACTGCT 245490 Query 7824 TC 7825 || Sbjct 245491 TC 245492 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635102107207440