Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702545
.1_202016-08-10] 3,866 sequences; 57,435,926 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq2756 96.9 3e-14
seq3657 93.3 3e-13
seq1346 91.5 1e-12
>seq2756
Length=1201414
Score = 96.9 bits (106), Expect = 3e-14
Identities = 155/220 (70%), Gaps = 2/220 (1%)
Strand=Plus/Minus
Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316
|||||||| || | || || ||| ||| || ||| ||||| || | |||||||
Sbjct 797595 AGACGGAGAACCAAGTGGAGAGTAGATTCCTTCTGAATGTTGTAGTCGGAAAGAGTTCGG 797536
Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376
|||||||||||| || || || || || |||| || ||||| |||||||| || ||
Sbjct 797535 CCATCTTCAAGTTGCTTGCCAGCGAAGATGAGTCGCTGTTGATCGGGAGGAATACCCTCC 797476
Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGT 563435
|| || || || || || || ||||| ||||| | ||| | | ||| |||||
Sbjct 797475 TTGTCCTGGATCTTGCTCTTCACATTATCAATGGTATC-GGATGACTCGACTTCCAGAGT 797417
Query 563436 AACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475
|| || || ||||| || || || ||||| |||||||||
Sbjct 797416 AATGGTCTTTCCAGTGAGGGTCTTGACGAAGATTTGCATA 797377
Score = 93.3 bits (102), Expect = 3e-13
Identities = 102/136 (75%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 563256 GAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCT 563315
||| ||||| || |||||||||||| ||| || ||| ||||| || || || ||||
Sbjct 797368 GAGGCGGAGGACGAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCGGCAAGGGTTCG 797309
Query 563316 TGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTC 563375
|||||| ||||| ||||| ||||| || || | ||||| |||||||| || || ||
Sbjct 797308 GCCATCTTCGAGTTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGGATGCCCTC 797249
Query 563376 TTTATCTTGAATTTTT 563391
|| || ||||| |||
Sbjct 797248 CTTGTCCTGAATCTTT 797233
>seq3657
Length=4224935
Score = 93.3 bits (102), Expect = 3e-13
Identities = 87/111 (78%), Gaps = 0/111 (0%)
Strand=Plus/Plus
Query 390901 TTAACTAATTTTCTTTGGATATAACCAGTGTCTGCAGTTTTAATTGCAGTATTAATAATA 390960
||||| ||| || ||||||||||| || || ||||| || | |||||||| ||| | |
Sbjct 1405231 TTAACCAATCGTCGCTGGATATAACCTGTTTCGGCAGTCTTGACTGCAGTATCAATGAGA 1405290
Query 390961 CCTTCTCTTCCTGCCATAACTTGGAAGAAAAATTCCATAGGATTGAGTCCA 391011
||||||| || ||||| | |||||||||||||| ||||| |||| |||
Sbjct 1405291 CCTTCTCGACCAGCCATGGCGTGGAAGAAAAATTCGCTAGGAGTGAGACCA 1405341
Score = 91.5 bits (100), Expect = 1e-12
Identities = 97/128 (76%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATT 550468
||||| || || || || || || || || ||||||||||| || |||||||| | ||
Sbjct 1686530 ACTGTCCCCGCCTACTTCAACGATTCTCAGCGTCAAGCTACCAAGGATGCTGGTCTCATC 1686589
Query 550469 GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGA 550528
|| || || || ||||| || || ||||| || ||||||||||| || |||| || ||
Sbjct 1686590 GCCGGTCTCAACGTTCTCCGAATCATCAACGAGCCTACTGCTGCCGCCATTGCCTACGGT 1686649
Query 550529 CTTGATAA 550536
||||| ||
Sbjct 1686650 CTTGACAA 1686657
Score = 89.7 bits (98), Expect = 4e-12
Identities = 100/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 720790 CCATCCCTTCCTGCACGACCAATTTCTTGATAATATCCTTCAATATTTTTAGGTGCACCA 720849
||||| || ||||| || ||| | || |||||||| ||||| | | || || ||||
Sbjct 2587316 CCATCTCTGCCTGCGCGGCCAGTCTCCTGATAATAGCCTTCCAGGCTCTTTGGAAGACCA 2587257
Query 720850 TAATGTATAACTGCTCTCACATCACTTTTATTTATTCCCATTCCAAAAGCAATCGTCGCA 720909
| |||||||| |||||||||| || | || ||||||||||| || || || |||
Sbjct 2587256 TGGTGTATAACGAATCTCACATCAGGCTTGTCAATACCCATTCCAAATGCGATTGTAGCA 2587197
Query 720910 ACCATAACTTTAAC 720923
|||| |||||||||
Sbjct 2587196 ACCACAACTTTAAC 2587183
>seq1346
Length=329643
Score = 91.5 bits (100), Expect = 1e-12
Identities = 124/173 (72%), Gaps = 0/173 (0%)
Strand=Plus/Minus
Query 550004 GATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAAATTATT 550063
||| | ||||||||||| || ||||| ||||| ||| || || || ||||| ||| |
Sbjct 245848 GATCTTGGAACCACATACAGCTGTGTCGGTGTGATGCAGAAGGGCAAGGTTGAGATTCTC 245789
Query 550064 GCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACTGAACAT 550123
| ||| ||||| |||||| ||| ||||| ||||| || | ||||| || ||| | |
Sbjct 245788 GTCAACGATCAGGGTAACCGAATCACTCCCTCTTACGTCGCCTTCACCGAGGATGAGCGT 245729
Query 550124 TTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACTAT 550176
|| ||||| || || || || | || ||| | | ||| || || || || ||
Sbjct 245728 TTGGTTGGAGACGCCGCCAAGAACCAGGCCGCCGCTAACCCCACGAACACCAT 245676
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4029091548484340
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |