Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702545
.1_202016-08-10] 3,866 sequences; 57,435,926 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq3504 196 7e-44
seq380 114 2e-19
>seq3504
Length=162315
Score = 196 bits (216), Expect = 7e-44
Identities = 356/507 (70%), Gaps = 12/507 (2%)
Strand=Plus/Minus
Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834
||| ||| |||||||| || ||||| ||||| ||||| ||||| || |||||| | || |
Sbjct 155467 GATTTGGCAAATGTAC-AAGAAGGCTGAGGCTTCCTTCTGGACTGCTGAGGAGATTGATC 155409
Query 1455835 TCGGCGCCGA-CACGGTCCACTGGGTGT--CGC-TGAGCGACGACGAGCGCCATTTCATC 1455890
| | || | | | ||||| ||| ||| | ||| |||| ||| ||
Sbjct 155408 TTTCCAAGGATCTCCATG-ACTGGAACAACCGCCTGACTGCCGATGAGCAGTTCTTCGTC 155350
Query 1455891 AAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGG 1455950
||| |||| || ||||||||| ||| ||||| || || ||||||||| | ||
Sbjct 155349 TCTCACATCCTTGC-TTTTTTCGCTGCCTCTGATGGTATTGTCAACGAGAACCTCGTCGA 155291
Query 1455951 CCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGC 1456010
|| || | |||||||| | || ||||| |||| || ||||| |||||||||
Sbjct 155290 GCGATTCAGTGGCGAGGTCCAGATCCCCGAGGCTCGTTGCTTCTACGGCTTCCAGATCAT 155231
Query 1456011 CATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCC 1456070
|| || ||||||||||| || |||||||| || || || ||||||||| ||||||| ||
Sbjct 155230 GATGGAGAACATCCACTCCGAGACCTACTCCCTGCTCATTGACACCTACATCAAGGAGCC 155171
Query 1456071 GGTCGAGAAGGACC-ACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGG 1456129
| | || | ||| |||||||| |||||| || || | || | | | || ||||
Sbjct 155170 CGCCCAGC-GAACCTACCTCTTTAACGCCATTGAGACCATCCCCTGCATCCGAAAGAAGG 155112
Query 1456130 CCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGT 1456189
|||||||||| || |||||| | | | || ||| | ||||||| |||| |||||
Sbjct 155111 CCGACTGGGCCATCCGATGGATCCAGGA-TAAGGACTCCTC-CTTTGCCCAGCGTCTCGT 155054
Query 1456190 CGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCT 1456248
| || || || || ||||| ||||| ||| || ||| | | ||||| |||||
Sbjct 155053 TGCTTTCGCTGCTGTTGAGGGTATCTTCTTCAGTGGTGCCTTCGCCTCTATCTTCTGGCT 154994
Query 1456249 CAAGAAGCGCGGCCTCATGCCCGGTCT 1456275
||||||||| || ||||||||||||||
Sbjct 154993 CAAGAAGCGTGGTCTCATGCCCGGTCT 154967
Score = 86.0 bits (94), Expect = 9e-11
Identities = 168/243 (69%), Gaps = 4/243 (2%)
Strand=Plus/Minus
Query 1456532 GAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCGCTCATCGGC 1456591
|| |||||| ||| ||| | ||||| ||| ||| | || || || || |||||
Sbjct 154848 GATGCCGTCACGATTGAGCAGGAGTTCCTCACTGAGGCTCTTCCCTGTGCCCTTCTCGGC 154789
Query 1456592 ATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCCTGCTCGCGG 1456651
|||||| | | |||||| ||||||||||| || ||||| || || || || | |
Sbjct 154788 ATGAACTCTGAC-CTCATGAAGCAGTACATTGAGTTC-GTCGCTGATCGTCTCCTTGTCG 154731
Query 1456652 CGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATGGAGTTGATC 1456711
|||| ||| || ||||| ||| | | ||||||| ||| | |||||| |||
Sbjct 154730 CGCTTGGCAACG-AGAAGGTTTACAAGGCCACCAACCCCTTCGACTTCATGGAGAACATC 154672
Query 1456712 TCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCG-TGGCGAGTACGCCAAGGCCGGC 1456770
|| || | |||||||||||||| |||||| || | || ||| ||| ||||||||
Sbjct 154671 TCCCTTGGTGGCAAGACCAACTTCTTCGAGAAGCGTGTTGCCGACTACCAGAAGGCCGGT 154612
Query 1456771 GTC 1456773
|||
Sbjct 154611 GTC 154609
>seq380
Length=2124523
Score = 114 bits (126), Expect = 2e-19
Identities = 180/258 (70%), Gaps = 0/258 (0%)
Strand=Plus/Minus
Query 259925 CCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGGAC 259984
||||||||||| || |||||||| || | || || || || ||||| || | ||
Sbjct 1306188 CCCACGCTCTTCAACGCCGGCACCCCTCAGCCCCAATTGTCATCTTGCTTCTTGGTTGAT 1306129
Query 259985 ATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTCC 260044
||||||| ||| || ||||| ||||| || || |||||| || || | ||||||
Sbjct 1306128 ATGAAGGACGACAGTATTGAGGGAATCTACGATACTCTCAAGACCTGTGCCATGATCTCC 1306069
Query 260045 AAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTACGTG 260104
||| ||| || || || ||| | || ||| | || || | ||| |||| |
Sbjct 1306068 AAGATGGCTGGTGGTATTGGTCTGAACGTGCACCGTATCCGTGCTACTGGCTCCTATATC 1306009
Query 260105 GCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACACG 260164
|| || |||||||| || ||||| |||| || |||||||| || || ||| ||||
Sbjct 1306008 GCCGGTACCAACGGTACATCGAACGGTGTTGTTCCTATGCTTCGTGTCTTCAACAACACT 1305949
Query 260165 GCGCGCTACGTCGACCAG 260182
|| ||||| |||||||||
Sbjct 1305948 GCTCGCTATGTCGACCAG 1305931
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7177438317194292
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |