Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702545 .1_202016-08-10] 3,866 sequences; 57,435,926 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq3504 196 7e-44 seq380 114 2e-19 >seq3504 Length=162315 Score = 196 bits (216), Expect = 7e-44 Identities = 356/507 (70%), Gaps = 12/507 (2%) Strand=Plus/Minus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| |||||||| || ||||| ||||| ||||| ||||| || |||||| | || | Sbjct 155467 GATTTGGCAAATGTAC-AAGAAGGCTGAGGCTTCCTTCTGGACTGCTGAGGAGATTGATC 155409 Query 1455835 TCGGCGCCGA-CACGGTCCACTGGGTGT--CGC-TGAGCGACGACGAGCGCCATTTCATC 1455890 | | || | | | ||||| ||| ||| | ||| |||| ||| || Sbjct 155408 TTTCCAAGGATCTCCATG-ACTGGAACAACCGCCTGACTGCCGATGAGCAGTTCTTCGTC 155350 Query 1455891 AAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGG 1455950 ||| |||| || ||||||||| ||| ||||| || || ||||||||| | || Sbjct 155349 TCTCACATCCTTGC-TTTTTTCGCTGCCTCTGATGGTATTGTCAACGAGAACCTCGTCGA 155291 Query 1455951 CCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGC 1456010 || || | |||||||| | || ||||| |||| || ||||| ||||||||| Sbjct 155290 GCGATTCAGTGGCGAGGTCCAGATCCCCGAGGCTCGTTGCTTCTACGGCTTCCAGATCAT 155231 Query 1456011 CATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCC 1456070 || || ||||||||||| || |||||||| || || || ||||||||| ||||||| || Sbjct 155230 GATGGAGAACATCCACTCCGAGACCTACTCCCTGCTCATTGACACCTACATCAAGGAGCC 155171 Query 1456071 GGTCGAGAAGGACC-ACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGG 1456129 | | || | ||| |||||||| |||||| || || | || | | | || |||| Sbjct 155170 CGCCCAGC-GAACCTACCTCTTTAACGCCATTGAGACCATCCCCTGCATCCGAAAGAAGG 155112 Query 1456130 CCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGT 1456189 |||||||||| || |||||| | | | || ||| | ||||||| |||| ||||| Sbjct 155111 CCGACTGGGCCATCCGATGGATCCAGGA-TAAGGACTCCTC-CTTTGCCCAGCGTCTCGT 155054 Query 1456190 CGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCT 1456248 | || || || || ||||| ||||| ||| || ||| | | ||||| ||||| Sbjct 155053 TGCTTTCGCTGCTGTTGAGGGTATCTTCTTCAGTGGTGCCTTCGCCTCTATCTTCTGGCT 154994 Query 1456249 CAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 ||||||||| || |||||||||||||| Sbjct 154993 CAAGAAGCGTGGTCTCATGCCCGGTCT 154967 Score = 86.0 bits (94), Expect = 9e-11 Identities = 168/243 (69%), Gaps = 4/243 (2%) Strand=Plus/Minus Query 1456532 GAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCGCTCATCGGC 1456591 || |||||| ||| ||| | ||||| ||| ||| | || || || || ||||| Sbjct 154848 GATGCCGTCACGATTGAGCAGGAGTTCCTCACTGAGGCTCTTCCCTGTGCCCTTCTCGGC 154789 Query 1456592 ATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCCTGCTCGCGG 1456651 |||||| | | |||||| ||||||||||| || ||||| || || || || | | Sbjct 154788 ATGAACTCTGAC-CTCATGAAGCAGTACATTGAGTTC-GTCGCTGATCGTCTCCTTGTCG 154731 Query 1456652 CGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATGGAGTTGATC 1456711 |||| ||| || ||||| ||| | | ||||||| ||| | |||||| ||| Sbjct 154730 CGCTTGGCAACG-AGAAGGTTTACAAGGCCACCAACCCCTTCGACTTCATGGAGAACATC 154672 Query 1456712 TCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCG-TGGCGAGTACGCCAAGGCCGGC 1456770 || || | |||||||||||||| |||||| || | || ||| ||| |||||||| Sbjct 154671 TCCCTTGGTGGCAAGACCAACTTCTTCGAGAAGCGTGTTGCCGACTACCAGAAGGCCGGT 154612 Query 1456771 GTC 1456773 ||| Sbjct 154611 GTC 154609 >seq380 Length=2124523 Score = 114 bits (126), Expect = 2e-19 Identities = 180/258 (70%), Gaps = 0/258 (0%) Strand=Plus/Minus Query 259925 CCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGGAC 259984 ||||||||||| || |||||||| || | || || || || ||||| || | || Sbjct 1306188 CCCACGCTCTTCAACGCCGGCACCCCTCAGCCCCAATTGTCATCTTGCTTCTTGGTTGAT 1306129 Query 259985 ATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTCC 260044 ||||||| ||| || ||||| ||||| || || |||||| || || | |||||| Sbjct 1306128 ATGAAGGACGACAGTATTGAGGGAATCTACGATACTCTCAAGACCTGTGCCATGATCTCC 1306069 Query 260045 AAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTACGTG 260104 ||| ||| || || || ||| | || ||| | || || | ||| |||| | Sbjct 1306068 AAGATGGCTGGTGGTATTGGTCTGAACGTGCACCGTATCCGTGCTACTGGCTCCTATATC 1306009 Query 260105 GCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACACG 260164 || || |||||||| || ||||| |||| || |||||||| || || ||| |||| Sbjct 1306008 GCCGGTACCAACGGTACATCGAACGGTGTTGTTCCTATGCTTCGTGTCTTCAACAACACT 1305949 Query 260165 GCGCGCTACGTCGACCAG 260182 || ||||| ||||||||| Sbjct 1305948 GCTCGCTATGTCGACCAG 1305931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177438317194292