Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702545
.1_202016-08-10] 3,866 sequences; 57,435,926 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq380 228 9e-55
>seq380
Length=2124523
Score = 228 bits (252), Expect = 9e-55
Identities = 521/775 (67%), Gaps = 22/775 (3%)
Strand=Plus/Minus
Query 53180 CCTCAGTATCTTTTCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTC 53239
|||||| | | ||||||| || | | ||||| ||||| || | ||| |||
Sbjct 1306296 CCTCAGCACATGATCATGCGTGTGTCTGTTGGTATTTGGGGTGATGATATCGAGCGAGTC 1306237
Query 53240 CGTGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTC 53299
||||| ||| || | ||| | || | ||| || || ||| | || || || |||
Sbjct 1306236 TTGGAGACATACAACCTGATGTCCAGCAAATTCTTCACACATGCCTCTCCCACGCTCTTC 1306177
Query 53300 AACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGAC 53359
||||| || || ||| || || |||| |||||| |||| | |||||||| |||
Sbjct 1306176 AACGCCGGCACCCCTCAGCCCCAATTGTCATCTTGCTTCTTGGTTGATATGAAGGACGAC 1306117
Query 53360 TCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGT 53419
|| || || |||||||| || |||||| |||||| ||||||||| | | |||
Sbjct 1306116 AGTATTGAGGGAATCTACGATACTCTCAAGACCTGTGCCATGATCTCCAAGATGGCTGGT 1306057
Query 53420 GGTATCGGTATCCAC-TGCTC-GAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGA 53477
||||| ||| | || ||| | | | ||||||| | ||| | ||| || || |
Sbjct 1306056 GGTATTGGTCTGAACGTGCACCGTA--TCCGTGCTACTGGCTCCTATATCGCCGGTACCA 1305999
Query 53478 ACGG--CGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTA 53535
|||| | ||| | || | || |||||||| || |||||||||||||| || || ||
Sbjct 1305998 ACGGTACATCGA--ACGGTGTTGTTCCTATGCTTCGTGTCTTCAACAACACTGCTCGCTA 1305941
Query 53536 CGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCA 53595
||| |||||||||| ||||| || | || ||||||||||||||||| |||||
Sbjct 1305940 TGTCGACCAGGGTGGCAACAAGCGACCCGGTGCTTTTGCCATCTACCTCGAGCCTTGGCA 1305881
Query 53596 CGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTG 53655
| | || | | ||||| || || || ||| ||| || ||| | || ||| | ||
Sbjct 1305880 CTCTGATGTCTTCGAGTTCCTTGATCTCCGTAAGAACCACGGTAAAGAGGAGGTCCGTGC 1305821
Query 53656 CCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGA 53715
||||||||| || || || ||||| || || || |||||| | || || ||| |
Sbjct 1305820 CCGTGACCTTTTCCTCGCCCTTTGGATCCCTGATCTTTTCATGAAGCGTGTTGAAAAGAA 1305761
Query 53716 CGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTC-CAGGGTGTCTACGGTG 53774
|| || ||| ||||||||||| ||||||||||| |||||| | | || |||||| |
Sbjct 1305760 CGGCGACTGGACGCTGATGTGCCCCAACGAGTGCCCTGGCCTCGCCGACTG-CTACGGAG 1305702
Query 53775 AGGAGTTTAACGAGATGTATCGGACGTAC-----GCAGTTC-AGGGCCGCTACAAGAAGA 53828
||||||| | | |||| | |||| | || | |||| ||| ||||
Sbjct 1305701 AGGAGTTCGAGGCTCTGTACGAAAAGTACGAGAAGGAGGGCAAGGGTCGC------AAGA 1305648
Query 53829 AGGTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGC 53888
||||||| | | | ||| | || || || || |||| ||||| |||| |
Sbjct 1305647 CTATCAAGGCTCAGAAACTTTGGTACGCCATTCTTGAGGCCCAGACTGAGACCGGAAACC 1305588
Query 53889 CGTACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGG 53943
| | |||| |||||||||| | |||| ||||||||||| |||||| ||||
Sbjct 1305587 CATTCATGCTCTACAAGGATGCCTGCAACCGCAAGAGCAACCAAAAGAACCTCGG 1305533
Score = 89.7 bits (98), Expect = 6e-13
Identities = 530/830 (64%), Gaps = 54/830 (7%)
Strand=Plus/Minus
Query 55127 GTTGTGACTCGGAACCTGAACCGGGTCATCGACAAGAATTACTACCCGACTGAAGCGGCG 55186
||||| | ||| ||||||||| | ||||||| ||| ||||||| | | |||
Sbjct 1305378 GTTGTTATTCGCAACCTGAACAAGATCATCGATGTGAACCACTACCCTGTCCAGGAGGCT 1305319
Query 55187 CGCAAGTCCAACCTCCGGCACCGGCCCATCGCCATCGGTGTACAGGGCTTGGCCGACATC 55246
||||| ||| | || ||||| ||||| | | ||||| |||||| | |||||
Sbjct 1305318 CGCAACAGTAACATGCGCCACCGACCCATTGGTCTTGGTGTTCAGGGCCTTGCCGATGCT 1305259
Query 55247 TTCATGATGCTCGGAT--TGCCCTTCGACTCGGAACCT--GCTCGAGAAATTAACCAGGA 55302
||| | ||||| | |||||||||| || | || ||||| || | ||| || |
Sbjct 1305258 TTCCT--TGCTCTGCGCATGCCCTTCGAGTC--ACCCGAGGCTCGTGAGCTCAACAAGCA 1305203
Query 55303 CATCTTC-AGTCGCATCTACTTTGCAGCGCTCGAGGAGTC-GTGTCATCTGGCTATGAGC 55360
|||||| || | ||| ||| || || ||| | || ||| || ||||||| |
Sbjct 1305202 GATCTTCGAGAC-CATTTACCACGCTGCCCTCACTGCCTCCGTG-CAGCTGGCTAAGGAG 1305145
Query 55361 GAGGGGACCTACGAGACGTTCCGTGATTCGCCAGCTGACAAGGGACTTCTCCAGTTCGAT 55420
||||| ||||| || ||| | ||| || || |||| | |||||||||||
Sbjct 1305144 GAGGGTCCCTACTCCACCTTCAAAGGTTCCCCCGCCTCTGAGGGTATCCTCCAGTTCGAC 1305085
Query 55421 CTATGG---GGCAAG---TCTGACCCCATG---TTTGACA-------AGTTGAAG-CATG 55463
| ||| | |||| ||||||| | | | || | || |||| || |
Sbjct 1305084 ATGTGGAACGTCAAGCCCTCTGACCTCTGGGACTGGGAGACTCTTCGAGAGGAAGTCAAG 1305025
Query 55464 ACATTCACTTGTGGGGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGA 55523
||| ||| ||| | || ||| |||||| | || || ||||| || || |
Sbjct 1305024 ACA--CAC------GGCATCCGTAACAGTCTGCTCCTTGCTCCTATGCCTACTGCCAGTA 1304973
Query 55524 CGGCTCAGATCATGGGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGC 55583
| | ||||| |||||||||||||| |||||||| ||||| |||||||||||| |
Sbjct 1304972 CCTCCCAGATTCTGGGCAACAACGAGTGCTTCGAGCCCTACACCTCCAACATCTACCAAC 1304913
Query 55584 GCCGGACCCTAGCAGGTGAGTTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGA 55643
| || || || |||||||| | ||||| || ||||||||||
Sbjct 1304912 GACGTGTTCTCGCTGGTGAGTTCCAGGTTGTCAACCCCTGGCTGCTCAAGGACCTTGTCG 1304853
Query 55644 AGATCAACAAGTGGAACCCGCAG--ATCAAGA--CGGAT-ATTGTGCGGAACGGGGGGTC 55698
| || |||| ||| | || |||| || || |||| ||| || ||
Sbjct 1304852 ACATGGGTCTGTGGT--CCGATGCTATGAAGAACCGCATCATTGCTGAGAATGGT---TC 1304798
Query 55699 CGTCCAGAA---TCTGGAGATTCCTCTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGA 55755
| | ||||| || | || ||| | |||||| | || ||| || |||||
Sbjct 1304797 CATTCAGAACATTCCCAACATCCCTGCCGATGTCAAGGCTCTGTATAAGACCGTTTGGGA 1304738
Query 55756 GATTCCACAGAAG--AGTCTGATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAG 55813
||| | ||| |||| || | ||| ||||||||| ||||| | ||| || |||
Sbjct 1304737 GATCTCTCAGCGCCAAGTCG--TTCAGATGGCTGCTGATCGAGGTGCCTTCATTGATCAG 1304680
Query 55814 TCCCAGTCTCTGAACATCTTCATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCAC 55873
|||||||| ||||||||| |||| | | || | ||| |||| | | | ||||||
Sbjct 1304679 TCCCAGTCACTGAACATCCACATGAAAGACCCCACGATGGGCAAGATCACCAGTATGCAC 1304620
Query 55874 TTTTACGGGTGGAAGAAGGGACTCAAGACGGGTATGTACTATCTGCGGAC 55923
||| || |||||| || |||||||| || |||||||| || || ||
Sbjct 1304619 TTTGCAGGCTGGAAGCTTGGCCTCAAGACTGGCATGTACTACCTTCGTAC 1304570
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547189555786800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |