Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702545 .1_202016-08-10] 3,866 sequences; 57,435,926 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq380 228 9e-55 >seq380 Length=2124523 Score = 228 bits (252), Expect = 9e-55 Identities = 521/775 (67%), Gaps = 22/775 (3%) Strand=Plus/Minus Query 53180 CCTCAGTATCTTTTCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTC 53239 |||||| | | ||||||| || | | ||||| ||||| || | ||| ||| Sbjct 1306296 CCTCAGCACATGATCATGCGTGTGTCTGTTGGTATTTGGGGTGATGATATCGAGCGAGTC 1306237 Query 53240 CGTGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTC 53299 ||||| ||| || | ||| | || | ||| || || ||| | || || || ||| Sbjct 1306236 TTGGAGACATACAACCTGATGTCCAGCAAATTCTTCACACATGCCTCTCCCACGCTCTTC 1306177 Query 53300 AACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGAC 53359 ||||| || || ||| || || |||| |||||| |||| | |||||||| ||| Sbjct 1306176 AACGCCGGCACCCCTCAGCCCCAATTGTCATCTTGCTTCTTGGTTGATATGAAGGACGAC 1306117 Query 53360 TCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGT 53419 || || || |||||||| || |||||| |||||| ||||||||| | | ||| Sbjct 1306116 AGTATTGAGGGAATCTACGATACTCTCAAGACCTGTGCCATGATCTCCAAGATGGCTGGT 1306057 Query 53420 GGTATCGGTATCCAC-TGCTC-GAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGA 53477 ||||| ||| | || ||| | | | ||||||| | ||| | ||| || || | Sbjct 1306056 GGTATTGGTCTGAACGTGCACCGTA--TCCGTGCTACTGGCTCCTATATCGCCGGTACCA 1305999 Query 53478 ACGG--CGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTA 53535 |||| | ||| | || | || |||||||| || |||||||||||||| || || || Sbjct 1305998 ACGGTACATCGA--ACGGTGTTGTTCCTATGCTTCGTGTCTTCAACAACACTGCTCGCTA 1305941 Query 53536 CGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCA 53595 ||| |||||||||| ||||| || | || ||||||||||||||||| ||||| Sbjct 1305940 TGTCGACCAGGGTGGCAACAAGCGACCCGGTGCTTTTGCCATCTACCTCGAGCCTTGGCA 1305881 Query 53596 CGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTG 53655 | | || | | ||||| || || || ||| ||| || ||| | || ||| | || Sbjct 1305880 CTCTGATGTCTTCGAGTTCCTTGATCTCCGTAAGAACCACGGTAAAGAGGAGGTCCGTGC 1305821 Query 53656 CCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGA 53715 ||||||||| || || || ||||| || || || |||||| | || || ||| | Sbjct 1305820 CCGTGACCTTTTCCTCGCCCTTTGGATCCCTGATCTTTTCATGAAGCGTGTTGAAAAGAA 1305761 Query 53716 CGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTC-CAGGGTGTCTACGGTG 53774 || || ||| ||||||||||| ||||||||||| |||||| | | || |||||| | Sbjct 1305760 CGGCGACTGGACGCTGATGTGCCCCAACGAGTGCCCTGGCCTCGCCGACTG-CTACGGAG 1305702 Query 53775 AGGAGTTTAACGAGATGTATCGGACGTAC-----GCAGTTC-AGGGCCGCTACAAGAAGA 53828 ||||||| | | |||| | |||| | || | |||| ||| |||| Sbjct 1305701 AGGAGTTCGAGGCTCTGTACGAAAAGTACGAGAAGGAGGGCAAGGGTCGC------AAGA 1305648 Query 53829 AGGTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGC 53888 ||||||| | | | ||| | || || || || |||| ||||| |||| | Sbjct 1305647 CTATCAAGGCTCAGAAACTTTGGTACGCCATTCTTGAGGCCCAGACTGAGACCGGAAACC 1305588 Query 53889 CGTACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGG 53943 | | |||| |||||||||| | |||| ||||||||||| |||||| |||| Sbjct 1305587 CATTCATGCTCTACAAGGATGCCTGCAACCGCAAGAGCAACCAAAAGAACCTCGG 1305533 Score = 89.7 bits (98), Expect = 6e-13 Identities = 530/830 (64%), Gaps = 54/830 (7%) Strand=Plus/Minus Query 55127 GTTGTGACTCGGAACCTGAACCGGGTCATCGACAAGAATTACTACCCGACTGAAGCGGCG 55186 ||||| | ||| ||||||||| | ||||||| ||| ||||||| | | ||| Sbjct 1305378 GTTGTTATTCGCAACCTGAACAAGATCATCGATGTGAACCACTACCCTGTCCAGGAGGCT 1305319 Query 55187 CGCAAGTCCAACCTCCGGCACCGGCCCATCGCCATCGGTGTACAGGGCTTGGCCGACATC 55246 ||||| ||| | || ||||| ||||| | | ||||| |||||| | ||||| Sbjct 1305318 CGCAACAGTAACATGCGCCACCGACCCATTGGTCTTGGTGTTCAGGGCCTTGCCGATGCT 1305259 Query 55247 TTCATGATGCTCGGAT--TGCCCTTCGACTCGGAACCT--GCTCGAGAAATTAACCAGGA 55302 ||| | ||||| | |||||||||| || | || ||||| || | ||| || | Sbjct 1305258 TTCCT--TGCTCTGCGCATGCCCTTCGAGTC--ACCCGAGGCTCGTGAGCTCAACAAGCA 1305203 Query 55303 CATCTTC-AGTCGCATCTACTTTGCAGCGCTCGAGGAGTC-GTGTCATCTGGCTATGAGC 55360 |||||| || | ||| ||| || || ||| | || ||| || ||||||| | Sbjct 1305202 GATCTTCGAGAC-CATTTACCACGCTGCCCTCACTGCCTCCGTG-CAGCTGGCTAAGGAG 1305145 Query 55361 GAGGGGACCTACGAGACGTTCCGTGATTCGCCAGCTGACAAGGGACTTCTCCAGTTCGAT 55420 ||||| ||||| || ||| | ||| || || |||| | ||||||||||| Sbjct 1305144 GAGGGTCCCTACTCCACCTTCAAAGGTTCCCCCGCCTCTGAGGGTATCCTCCAGTTCGAC 1305085 Query 55421 CTATGG---GGCAAG---TCTGACCCCATG---TTTGACA-------AGTTGAAG-CATG 55463 | ||| | |||| ||||||| | | | || | || |||| || | Sbjct 1305084 ATGTGGAACGTCAAGCCCTCTGACCTCTGGGACTGGGAGACTCTTCGAGAGGAAGTCAAG 1305025 Query 55464 ACATTCACTTGTGGGGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGA 55523 ||| ||| ||| | || ||| |||||| | || || ||||| || || | Sbjct 1305024 ACA--CAC------GGCATCCGTAACAGTCTGCTCCTTGCTCCTATGCCTACTGCCAGTA 1304973 Query 55524 CGGCTCAGATCATGGGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGC 55583 | | ||||| |||||||||||||| |||||||| ||||| |||||||||||| | Sbjct 1304972 CCTCCCAGATTCTGGGCAACAACGAGTGCTTCGAGCCCTACACCTCCAACATCTACCAAC 1304913 Query 55584 GCCGGACCCTAGCAGGTGAGTTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGA 55643 | || || || |||||||| | ||||| || |||||||||| Sbjct 1304912 GACGTGTTCTCGCTGGTGAGTTCCAGGTTGTCAACCCCTGGCTGCTCAAGGACCTTGTCG 1304853 Query 55644 AGATCAACAAGTGGAACCCGCAG--ATCAAGA--CGGAT-ATTGTGCGGAACGGGGGGTC 55698 | || |||| ||| | || |||| || || |||| ||| || || Sbjct 1304852 ACATGGGTCTGTGGT--CCGATGCTATGAAGAACCGCATCATTGCTGAGAATGGT---TC 1304798 Query 55699 CGTCCAGAA---TCTGGAGATTCCTCTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGA 55755 | | ||||| || | || ||| | |||||| | || ||| || ||||| Sbjct 1304797 CATTCAGAACATTCCCAACATCCCTGCCGATGTCAAGGCTCTGTATAAGACCGTTTGGGA 1304738 Query 55756 GATTCCACAGAAG--AGTCTGATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAG 55813 ||| | ||| |||| || | ||| ||||||||| ||||| | ||| || ||| Sbjct 1304737 GATCTCTCAGCGCCAAGTCG--TTCAGATGGCTGCTGATCGAGGTGCCTTCATTGATCAG 1304680 Query 55814 TCCCAGTCTCTGAACATCTTCATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCAC 55873 |||||||| ||||||||| |||| | | || | ||| |||| | | | |||||| Sbjct 1304679 TCCCAGTCACTGAACATCCACATGAAAGACCCCACGATGGGCAAGATCACCAGTATGCAC 1304620 Query 55874 TTTTACGGGTGGAAGAAGGGACTCAAGACGGGTATGTACTATCTGCGGAC 55923 ||| || |||||| || |||||||| || |||||||| || || || Sbjct 1304619 TTTGCAGGCTGGAAGCTTGGCCTCAAGACTGGCATGTACTACCTTCGTAC 1304570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547189555786800