Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702555
.1_202016-08-10] 3,634 sequences; 56,857,404 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq2380 185 1e-41
>seq2380
Length=1938854
Score = 185 bits (204), Expect = 1e-41
Identities = 572/880 (65%), Gaps = 10/880 (1%)
Strand=Plus/Plus
Query 53785 GATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAA 53844
|||||| || | || | ||| || ||||| ||| || |||||||| || || |||||
Sbjct 1154061 GATGGTACCGAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAA 1154120
Query 53845 TGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTAT 53904
||| | || || ||| |||||| || | ||| || | ||| | ||||||| ||
Sbjct 1154121 TGGGTTTCCGGTCTCAGTCTGGGCCTCAAGAATGGCGTACCAAAGTTTCTGAGCCTTGAT 1154180
Query 53905 TATAGATTTGTATCTCTTTTCT--CTT-TCGTATAGTGTATACAATCGTTCAAACTCGTC 53961
|| ||| | ||| | ||| ||||| | |||| || ||||| ||
Sbjct 1154181 ---AGTCTTGCGACCCTTGCCCTCCTTCTCGTACTTTTCGTACAGAGCCTCGAACTCCTC 1154237
Query 53962 TCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTC 54021
||| | | | | | ||||| || || | || ||||||| || ||| || ||||
Sbjct 1154238 TCCGTAGCAGTCGGCGAGGCCAGGGCACTCGTTGGGGCACATCAGCGTCCAGTCGCCGTT 1154297
Query 54022 ATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGT 54081
| | || || ||||| || |||||||| |||||||| || | || || || | ||
Sbjct 1154298 CTTTTCAACACGCTTCATGAAAAGATCAGGGATCCAAAGGGCGAGGAAAAGGTCACGGGC 1154357
Query 54082 TCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATG 54141
| ||||| || || ||||| ||||| |||||| | | | |||||| ||
Sbjct 1154358 ACGGACCTCCTCTTTACCGTGGTTCTTACGGAGATCAAGGAACTCGAAGACATCAGAGTG 1154417
Query 54142 CCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTA 54201
||| || || | ||| |||| | | | || || || ||||| || ||||| || | ||
Sbjct 1154418 CCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTCGCTTGTTGCCACCCTGGTCGACATA 1154477
Query 54202 TCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGT 54261
| ||| ||||| || | || | | ||| |||| || ||| || |||| ||| |||||
Sbjct 1154478 GCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAACACCGTTCGATGTACCGTTGGT 1154537
Query 54262 CCCGGAGATATAGCTTCCACTGGCACGAATAT--TACTAATTGATAGACCTATCCCCCCT 54319
|||| ||||||| ||| | ||||| ||| | | || | |||| || || ||
Sbjct 1154538 ACCGGCGATATAGGAGCCAGTAGCACGGATACGGTGCACGTTCA--GACCAATACCACCA 1154595
Query 54320 GCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCA 54379
||||| || ||||| | || || || | ||||| ||||| ||||| ||||| ||
Sbjct 1154596 GCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCGTAGATTCCCTCAATACTGTCG 1154655
Query 54380 TCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAAT 54439
||| |||| | || | || || |||| |||| | || || || || || ||
Sbjct 1154656 TCCTTCATATCAACCAAGAAGCAAGATGACAATTGGGGCTGAGGGGTGCCGGCGTTGAAG 1154715
Query 54440 AAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCT 54499
| || ||||| || || || || |||| || | || ||||| ||||| | ||
Sbjct 1154716 AGCGTGGGAGAGGCATGTGTGAAGAATTTGCTGGACATCAGGTTGTATGTCTCCAAGACT 1154775
Query 54500 GAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTT 54559
|| ||||| ||| || || | |||||||| | |||||||||||| |
Sbjct 1154776 CGCTCGATATCATCACCCCAAATACCAACAGACACACGCATGATCATGTGCTGAGGGCGC 1154835
Query 54560 TCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAA 54619
|| || ||||| || || || || | ||| ||| |||||||| || || |||||
Sbjct 1154836 TCGACAATCTTACCGTCAATCTTGAGGAGGTATGATCGCTCCAAAGTCTTGAAGCCAAAG 1154895
Query 54620 TAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGT 54659
|| | |||| || || || || || | ||| | ||||
Sbjct 1154896 TATTGGTATTGGAAATCGCGGTCATAGACAATGGCAGAGT 1154935
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593694630196320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |