Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702555
.1_202016-08-10] 3,634 sequences; 56,857,404 total letters
Query= NC_002687.1
Length=335593
Score E
Sequences producing significant alignments: (Bits) Value
seq2380 109 1e-18
>seq2380
Length=1938854
Score = 109 bits (120), Expect = 1e-18
Identities = 614/963 (64%), Gaps = 34/963 (4%)
Strand=Plus/Minus
Query 248783 TGGACGGCGCGATTGACTACGGCAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACGC 248842
||||| || |||| ||| | | ||||| | ||| | | ||||| ||||| ||
Sbjct 1154938 TGGACTCTGCCATTGTCTATGACCGCGATTTCCAATACCAATACTTTGGCTTCAAGACTT 1154879
Query 248843 TGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATTCAGCACATGT 248902
||||| ||| || |||||||| ||||| || ||||| || || || ||||||||||
Sbjct 1154878 TGGAGCGATCATACCTCCTCAAGATTGACGGTAAGATTGTCGAGCGCCCTCAGCACATGA 1154819
Query 248903 TGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAGCGTGCTCGAGACGTACA 248962
| ||||| ||| |||| || ||| ||||| || ||| | || | ||||| ||||
Sbjct 1154818 TCATGCGTGTGTCTGTTGGTATTTGGGGTGATGATATCGAGCGAGTCTTGGAGACATACA 1154759
Query 248963 CCGGAATG---AGTGAACGCTGGATGACACATGCCACACCGACGCTCTTCAACGCCGGTA 249019
| ||| || || || | ||||||||| | || ||||||||||||||||| |
Sbjct 1154758 ACCTGATGTCCAGCAAATTCT---TCACACATGCCTCTCCCACGCTCTTCAACGCCGGCA 1154702
Query 249020 -CCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGACTCTGTCGAC 249078
|| ||| | || || || ||||| | ||| ||| | |||||| | | ||
Sbjct 1154701 CCCCTCAGC-CCCAATTGTCATCTTGCTTCTTGGTTGATATGAAGGACGACAGTATTGAG 1154643
Query 249079 GGCATTTATGACACGCTTAAACAGAC---GGCGAAGATTTCTAAATTCGCGGGCGGAATC 249135
|| || || || || || | |||| || | ||| || || | || || || ||
Sbjct 1154642 GGAATCTACGATACTCTCA---AGACCTGTGCCATGATCTCCAAGATGGCTGGTGGTATT 1154586
Query 249136 GGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTACATCAAAGGTACAAATGGGGTC 249195
||||| ||| | ||||| || | || || || ||| ||||| || || |
Sbjct 1154585 GGTCTGAACGTGCACCGTATCCGTGCTACTGGCTCCTATATCGCCGGTACCAA-CGGTAC 1154527
Query 249196 AGTG-ATGGTATCGTACCCCTCCTTCGATGCTTTGAGTCCACCGCCAGGTTCATCAACCA 249254
| | | ||| | || || | ||||| ||| | ||| || | | || ||||
Sbjct 1154526 ATCGAACGGTGTTGTTCCTATGCTTCGTGTCTTCAACAACACTGCTCGCTATGTCGACCA 1154467
Query 249255 GGCCGGGCGC---CGAAAGGGGTCGTTCGCCATGTATTTGGAAGTGTGGCACGCCGATAT 249311
|| || | ||| || | || ||||| || | || |||||| | ||| |
Sbjct 1154466 GGGTGGCAACAAGCGACCCGGTGCTTTTGCCATCTACCTCGAGCCTTGGCACTCTGATGT 1154407
Query 249312 ATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAACGAGCTCATGAGAGCGCGTGACCT 249371
|| |||||||| || | |||||| |||| || ||| | | || ||||||||
Sbjct 1154406 CTTCGAGTTCCTTGATCTCCGTAAGAACCACGGTAAAGAGGAGGTCCGTGCCCGTGACCT 1154347
Query 249372 CTTCTACGGCCTGTGGGTCTCCGACTTGTTCATGCGCCGCGTCAAGGCCGACGGCGATTG 249431
||| || ||| ||| || | || | |||||| || || | ||||||| ||
Sbjct 1154346 TTTCCTCGCCCTTTGGATCCCTGATCTTTTCATGAAGCGTGTTGAAAAGAACGGCGACTG 1154287
Query 249432 GACGCTTCTTTCTCCGTCCGACGCCCCGGACCTCATCGATCTAC-ACGGCGCCGACTTCG 249490
|||||| | | || ||| ||| | |||| ||| || | |||| | || ||||
Sbjct 1154286 GACGCTGATGTGCCCCAACGAGTGCCCTGGCCTCGCCGA-CTGCTACGGAGAGGAGTTCG 1154228
Query 249491 ACCAAGC-CTATAAGAAA--TACGAATCCAACGGCATCG---GCAAGACAATCAAGGCTC 249544
| || || || |||| ||||| | |||| | ||||||| ||||||||||
Sbjct 1154227 ---AGGCTCTGTACGAAAAGTACGAGAAGGAGGGCAAGGGTCGCAAGACTATCAAGGCTC 1154171
Query 249545 GGACCCTTT-TTGCGAAGGTGGTGGAGTCCCAGATAGAGACAGGGGGGCCGTATTAT-TT 249602
|| |||| | || | | ||| |||||| ||||| || || | | || |
Sbjct 1154170 AGAAACTTTGGTACG-CCATTCTTGAGGCCCAGACTGAGACCGGAAACCCAT-TCATGCT 1154113
Query 249603 GTTCAAAGACGCGTGCAACGCCAAGAGTAACCAACGGCATCTTGGTACCATCCGCTCGTC 249662
| ||| || || |||||| |||||| |||||| | | || ||||||||||| ||
Sbjct 1154112 CTACAAGGATGCCTGCAACCGCAAGAGCAACCAAAAGAACCTCGGTACCATCCGAAGCTC 1154053
Query 249663 AAATCTCTGTGCAGAGGTGATTCAATACTCGTCCAAGGAGGAGATTGCCGTCTGCAACCT 249722
|| || || | || | ||| | |||| || || ||| | || |||||||||||
Sbjct 1154052 CAACCTGTGCACTGAAATTATTGAGTACTGTGCCCCTGACGAGGTCGCTGTCTGCAACCT 1153993
Query 249723 GGC 249725
||
Sbjct 1153992 TGC 1153990
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1073716404765312
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |