Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702555 .1_202016-08-10] 3,634 sequences; 56,857,404 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq2380 168 8e-37 >seq2380 Length=1938854 Score = 168 bits (186), Expect = 8e-37 Identities = 582/899 (65%), Gaps = 18/899 (2%) Strand=Plus/Plus Query 63023 GATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAA 63082 ||| || || | || | ||| || ||||| ||| || |||||||| || || ||||| Sbjct 1154061 GATGGTACCGAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAA 1154120 Query 63083 TGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTC-GAGCCTTTA 63141 ||| | || || ||| |||| | || | ||| || | ||| | | || ||||||| | Sbjct 1154121 TGGGTTTCCGGTCTCAGTCTGGGCCTCAAGAATGGCGTACCAAA-GTTTCTGAGCCTTGA 1154179 Query 63142 TTATAGATTTGTATCTCCTTTCTCTT----TCGTA--TAGAGTATACAATCGTTCGAACT 63195 | || ||| | |||| | || ||||| | ||| | | | ||||||| Sbjct 1154180 T---AGTCTTGCGAC-CCTTGCCCTCCTTCTCGTACTTTTCGTACAGAGCC--TCGAACT 1154233 Query 63196 CGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGACCACTCTC 63255 | ||||| | | | | | | ||| || || | || ||||||| || ||| || | Sbjct 1154234 CCTCTCCGTAGCAGTCGGCGAGGCCAGGGCACTCGTTGGGGCACATCAGCGTCCAGTCGC 1154293 Query 63256 CGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTC 63315 ||| | | || || ||||| || |||||||| |||||||| || | || || || | Sbjct 1154294 CGTTCTTTTCAACACGCTTCATGAAAAGATCAGGGATCCAAAGGGCGAGGAAAAGGTCAC 1154353 Query 63316 TTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAG 63375 | | ||||| || || ||||| ||||| |||||| | | | ||||| Sbjct 1154354 GGGCACGGACCTCCTCTTTACCGTGGTTCTTACGGAGATCAAGGAACTCGAAGACATCAG 1154413 Query 63376 AATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTA 63435 | ||||| || || | ||| ||||| | | | || || || ||||| || ||||| || | Sbjct 1154414 AGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTCGCTTGTTGCCACCCTGGTCGA 1154473 Query 63436 TGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCAT 63495 || | ||| ||||| || | || | | ||| |||| || |||||| ||| |||| | Sbjct 1154474 CATAGCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAACACCGTTCGATGTACCGT 1154533 Query 63496 TGGTACCGGAGATATAGCCTCCACTGGCACGAATAT--TACTAATTGATAGACCTATTCC 63553 ||||||||| ||||||| ||| | ||||| ||| | | || | |||| || || Sbjct 1154534 TGGTACCGGCGATATAGGAGCCAGTAGCACGGATACGGTGCACGTTCA--GACCAATACC 1154591 Query 63554 CCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCT 63613 || ||||| || ||||| | || || || | || || ||||| || || || || Sbjct 1154592 ACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCGTAGATTCCCTCAATACT 1154651 Query 63614 ATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATT 63673 || || |||| | || | || || |||| |||| | ||| || || || || Sbjct 1154652 GTCGTCCTTCATATCAACCAAGAAGCAAGATGACAATTGGGGCTGAGGGGTGCCGGCGTT 1154711 Query 63674 AAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAAT 63733 || | || ||||| || || || || |||| || | || ||||| ||||| | Sbjct 1154712 GAAGAGCGTGGGAGAGGCATGTGTGAAGAATTTGCTGGACATCAGGTTGTATGTCTCCAA 1154771 Query 63734 AGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGG 63793 || || ||||| ||| || || | |||||||| | |||||||||||| Sbjct 1154772 GACTCGCTCGATATCATCACCCCAAATACCAACAGACACACGCATGATCATGTGCTGAGG 1154831 Query 63794 TCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACC 63853 | || ||||| || || || || | | ||| ||| |||||||| || || || Sbjct 1154832 GCGCTCGACAATCTTACCGTCAATCTTGAGGAGGTATGATCGCTCCAAAGTCTTGAAGCC 1154891 Query 63854 AAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGCTTATCCTTAT 63912 ||| || | |||| || || || || || | ||| | || | | || ||||||| Sbjct 1154892 AAAGTATTGGTATTGGAAATCGCGGTCATAGACAATGGCAGAGTCCAACTCCTCCTTAT 1154950 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629788990535520