Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702555
.1_202016-08-10] 3,634 sequences; 56,857,404 total letters
Query= NC_008035.3
Length=126629
Score E
Sequences producing significant alignments: (Bits) Value
seq3314 109 4e-19
seq3215 87.8 1e-12
>seq3314
Length=1526608
Score = 109 bits (120), Expect = 4e-19
Identities = 148/204 (73%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792
|| || || |||||||| || |||||||||||| || ||| | || ||||| ||
Sbjct 658736 TGAAGAGTTGACTCCTTCTGGATGTTGTAGTCGCTCAAGGTGCGACCATCTTCCAACTGC 658795
Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAAT-TTG 16851
|| || || | ||||| |||||||| || || | ||||| ||||| ||| |||
Sbjct 658796 TTACCAGCGAAGATAAGACGCTGTTGATCAGGGGGAATACCCTCCTTGTCCTGAATCTTG 658855
Query 16852 CTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGT 16911
|| |||||| | | | | |||||| | || ||| || | ||||||||| ||||||||
Sbjct 658856 CT-CTTCACGTTGTCGATAGTGTCACTGGACTCGACCTCAAGGGTGATGGTCTTTCCGGT 658914
Query 16912 CAGCGTTTTGACAAAAATCTGCAT 16935
|| || || ||||||||||||||
Sbjct 658915 GAGAGTCTTCACAAAAATCTGCAT 658938
>seq3215
Length=308419
Score = 87.8 bits (96), Expect = 1e-12
Identities = 149/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783
|| |||| || || ||||||||||| || |||||||||||| || ||| | |||
Sbjct 31151 AGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGTCCATCC 31092
Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843
|| | || ||||| ||| | || || ||||| ||||| || | |||||| |||||
Sbjct 31091 TCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 31032
Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903
|| | ||| || | | | | |||||| | |||| || | |||||| ||
Sbjct 31031 TGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTC 30972
Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939
|| || || || || ||||| ||||||||||| |||
Sbjct 30971 TTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTTG 30936
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 405070058905660
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |