Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702555
.1_202016-08-10] 3,634 sequences; 56,857,404 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq3314 140 8e-28
seq3215 116 9e-21
seq3193 96.9 8e-15
seq3413 91.5 3e-13
>seq3314
Length=1526608
Score = 140 bits (154), Expect = 8e-28
Identities = 171/231 (74%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303
|| |||||||| |||| || ||||| |||| || || || ||||| || ||||||
Sbjct 658709 TGGCCACCGCGAAGTCGGAGAACGAGGTGAAGAGTTGACTCCTTCTGGATGTTGTAGTCG 658768
Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363
| ||||| || ||||| || || || || |||||||| |||||||||||| |
Sbjct 658769 CTCAAGGTGCGACCATCTTCCAACTGCTTACCAGCGAAGATAAGACGCTGTTGATCAGGG 658828
Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTTTTCTATAGAATCGCTCGATTC 288422
|| || || || || ||||| || || ||| |||||||| || |||| || || || ||
Sbjct 658829 GGAATACCCTCCTTGTCCTGAATCTT-GCTCTTCACGTTGTCGATAGTGTCACTGGACTC 658887
Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || || ||||| ||||| ||||| |||||||| || || ||||||||
Sbjct 658888 GACCTCAAGGGTGATGGTCTTTCCGGTGAGAGTCTTCACAAAAATCTGCAT 658938
Score = 129 bits (142), Expect = 1e-24
Identities = 161/221 (73%), Gaps = 0/221 (0%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| ||||| | || |||||||||| || ||| || || || || ||||||||
Sbjct 659168 CCACCACGGAGGCGGAGGACGAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCGGCA 659227
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| || || || ||||| | ||| ||||| || |||||||||||||| || | |||
Sbjct 659228 AGGGTTCGGCCATCTTCGAGTTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGG 659287
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|| || || || ||||| || || | || || || || || | |||| ||| || ||
Sbjct 659288 ATGCCCTCCTTGTCCTGAATCTTTGACTTAACATTGTCGATGGTATCGGACGACTCGACC 659347
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATAT 288467
|| || ||||| ||||| || || || |||||||||| |||
Sbjct 659348 TCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACGACTAT 659388
Score = 107 bits (118), Expect = 5e-18
Identities = 141/193 (73%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341
||| || || || || ||||||| || || || || ||||| | ||| || || |||||
Sbjct 658975 TTCCTTCTGAATGTTGTAGTCGGAAAGAGTTCGGCCATCTTCAAGTTGCTTGCCAGCGAA 659034
Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGT 288400
||| || ||||||||| || || || || || |||||||| || ||| ||||| |
Sbjct 659035 GATGAGTCGCTGTTGATCGGGAGGAATACCCTCCTTGTCCTGGATCTT-GCTCTTCACAT 659093
Query 288401 TTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGA 288460
| || || | |||| || || ||||| || || || ||||| || || || |||||||
Sbjct 659094 TATCAATGGTATCGGATGACTCGACTTCCAGAGTAATGGTCTTTCCAGTGAGGGTCTTGA 659153
Query 288461 CGAATATCTGCAT 288473
|||| || |||||
Sbjct 659154 CGAAGATTTGCAT 659166
Score = 104 bits (114), Expect = 6e-17
Identities = 164/234 (70%), Gaps = 6/234 (3%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| ||||| | || || || |||| ||| || || || || || || || | |
Sbjct 659450 CCACCACGGAGGCGGAGAACAAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGAG 659509
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| ||||| ||||| || | || || || ||||| |||| || || || || |||
Sbjct 659510 AGAGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAAAATCAAGCGTTGCTGG---TCGGGG 659566
Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423
|| || || || ||||| || || | || || || || |||| ||| || ||
Sbjct 659567 GGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATAGTGTCGGAAGACTCA 659626
Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477
|| ||||| ||||| ||||| ||||||| ||||||||||| |||||||| |||
Sbjct 659627 ACCTCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCATGATG 659680
>seq3215
Length=308419
Score = 116 bits (128), Expect = 9e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| ||||| | || || || || | ||| || || ||||| || ||||||
Sbjct 31166 CCACCACGGAGGCGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTC 31107
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| |||||||| || || | || || || || ||||| || ||||| || | |||
Sbjct 31106 AGGGTGCGTCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGG 31047
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|| || || || |||||||| || | || ||||| || || | ||| || || ||
Sbjct 31046 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 30987
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || |||||||||||||| || || ||||||||||| ||||||||
Sbjct 30986 TCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 30940
>seq3193
Length=700513
Score = 96.9 bits (106), Expect = 8e-15
Identities = 145/206 (70%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 269119 GAGTTCATTTGTGACGCTATCCCATGTTCTATGATCGGTATGAATGCCGATCTCATGAAT 269178
|||||| | ||| ||| | || ||| | | |||| ||||| | || ||||||||
Sbjct 692906 GAGTTCCTCACTGAGGCTCTTCCCTGTGCCCTTCTCGGCATGAACTCTGACCTCATGAAG 692847
Query 269179 CAATATATCGAATTCGTGGCTGATCGTATCTTCACGGCACTCGGTTATGAGAAAGTGTAC 269238
|| || || || ||||| ||||||||| || | || || || | ||||| || |||
Sbjct 692846 CAGTACATTGAGTTCGTCGCTGATCGTCTCCTTGTCGCGCTTGGCAACGAGAAGGTTTAC 692787
Query 269239 AATTCGAAGAATCCCTTCGCCTTTATGGAACTAATTTCGCTCGAAGGAAAGACGAACTTC 269298
|| | | || ||||||| ||| ||||| || || || | || ||||| ||||||
Sbjct 692786 AAGGCCACCAACCCCTTCGACTTCATGGAGAACATCTCCCTTGGTGGCAAGACCAACTTC 692727
Query 269299 TTCGAAAAGCGTGTCAGCGACTATCA 269324
||||| |||||||| |||||| ||
Sbjct 692726 TTCGAGAAGCGTGTTGCCGACTACCA 692701
>seq3413
Length=699090
Score = 91.5 bits (100), Expect = 3e-13
Identities = 130/182 (71%), Gaps = 6/182 (3%)
Strand=Plus/Plus
Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345
|| ||||| || ||||||| ||| || || || || || | || || || |||||||||
Sbjct 500172 TTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCGAGCTGCTTACCAGCGAAGATC 500231
Query 288346 AGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402
|| |||||||| || ||| || || || || |||||||| || | || || ||
Sbjct 500232 AGTCGCTGTTG---GTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTG 500288
Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462
|| || | || || || || ||||| ||||| ||||| || ||||| ||||| |||
Sbjct 500289 TCGATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACG 500348
Query 288463 AA 288464
||
Sbjct 500349 AA 500350
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179599474553852
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |