Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702555 .1_202016-08-10] 3,634 sequences; 56,857,404 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq2380 196 6e-45 seq3193 190 2e-43 seq1602 86.0 7e-12 >seq2380 Length=1938854 Score = 196 bits (216), Expect = 6e-45 Identities = 1167/1843 (63%), Gaps = 45/1843 (2%) Strand=Plus/Plus Query 113565 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 113624 |||||||||| || || |||| || || ||||||||||| || |||||||| | Sbjct 1153076 TGAACTGAATAGGAGCAGCAGCAGCCTGTGTACGAAGGTAGTACATGCCAGTCTTGAGGC 1153135 Query 113625 CCTGCTTCCAGGCATACATA-TGCATCGAGGACAACTTGGAGAGTGTTGGACTTTCCATG 113683 | |||||||| | | || | ||||| || | |||| | || || || |||| Sbjct 1153136 CAAGCTTCCAGCC-TGCAAAGTGCATACTGGTGATCTTGCCCATCGTGGGGTCTTTCATG 1153194 Query 113684 AAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCACGATCCGCCGCCATATCAATC 113743 || ||||| ||||| ||||| |||||| || ||||| || ||||| | || Sbjct 1153195 TGGATGTTCAGTGACTGGGACTGATCAATGAAGGCACCTCGATCAGCAGCCATCTGAACG 1153254 Query 113744 ACATCCTTCATCTTGATTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGGATA 113803 || | | ||| ||||| || || | || || ||| | ||| | ||||| Sbjct 1153255 ACTTGGCGCTGAGAGATCTCCCAAACGGTCTTATACAGAGCCTTGACATCGGCAGGGATG 1153314 Query 113804 TCCACGATATTTTGGATGGAGCCACCCGCCTTGACCATGAGATCCTTCATATCCTTTGAC 113863 | || || || ||||| ||| | | | ||| | | ||||||| | | ||| Sbjct 1153315 TTGGGAATGTTCTGAATGGAACCATTCTCAGCAATGATGCGGTTCTTCATAGCATCGGAC 1153374 Query 113864 CAGAGACCAATCTTTTTGAGATCCTCCACGAGATGCTTATTGACAACAACAAACTCACCC 113923 || ||||| || | || |||| | || |||||||| |||||||| Sbjct 1153375 CACAGACCCATGTCGACAAGGTCCTTGAGCAGCCAGGGGTTGACAACCTGGAACTCACCA 1153434 Query 113924 GCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCC 113983 ||||| |||| | ||||| |||| ||||| ||||| |||||||| ||||| ||| Sbjct 1153435 GCGAGAACACGTCGTTGGTAGATGTTGGAGGTGTAGGGCTCGAAGCACTCGTTGTTGCCC 1153494 Query 113984 AAGATTTGGGCGGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCC 114043 | || |||| ||| ||| || ||||| || || | ||| || |||||||||| || Sbjct 1153495 AGAATCTGGGAGGTACTGGCAGTAGGCATAGGAGCAAGGAGCAGACTGTTACGGATGCCG 1153554 Query 114044 TTTTCCCTAATGCGTTC-CTTGAGG-GCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCT 114101 | | | | | | | | || || | | |||||||| || | | || | | Sbjct 1153555 TGTGTCTTGA--CTTCCTCTCGAAGAGTCTCCCAGTCCCAGAGGTCAGAGGGCTTGACGT 1153612 Query 114102 GCCACATATCAAACTGGAGGATACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATG 114161 |||||| || |||||||||||||| | ||||| || || || | || || ||| | Sbjct 1153613 TCCACATGTCGAACTGGAGGATACCCTCAGAGGCGGGGGAACCTTTGAAGGTGGAGTAGG 1153672 Query 114162 GGCCCTCAACCTCCGCCAATT---CGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCT 114218 | ||||| ||| |||| | ||||| || |||||| ||||| || || |||| Sbjct 1153673 GACCCTCCTCCTTAGCCAGCTGCACGGAG---GCAGTGAGGGCAGCGTGGTAAATGGTCT 1153729 Query 114219 CAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAA-A 114277 | || || | || | | |||||| || || || | | || || | | Sbjct 1153730 CGAAGATCTGCTTGTTGAGCTCACGAGCCTCGGGTGACTCGAAGGGCATGCG-CAGAGCA 1153788 Query 114278 ATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGAC 114337 | || |||| || || || || ||||| || ||||| || || || | ||| ||| Sbjct 1153789 AGGAAAGCATCGGCAAGGCCCTGAACACCAAGACCAATGGGTCGGTGGCGCATGTTACTG 1153848 Query 114338 TTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTG 114397 || ||||| || || || || ||| |||||| | | | || || || | Sbjct 1153849 TTGCGAGCCTCCTGGACAGGGTAGTGGTTCACATCGATGATCTTGTTCAGGTTGCGAATA 1153908 Query 114398 ACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCAT---TG 114454 ||||||| ||| | || | ||| | | | || | || || ||| || | || Sbjct 1153909 ACAACCTGACTGACCTTGTGCAACTTCTTGAAGTCGTA---GCAAGCCTCATCGTAGTTG 1153965 Query 114455 ACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTG 114514 | | || || || | || || || || || |||| | ||| || || | Sbjct 1153966 ATGAAAGAGGGCAGAGCCAGAGAGGCAAGGTTGCAGACAGCGACCTCGTCAGGGGCACAG 1154025 Query 114515 TACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTT 114574 ||||| |||||||| || |||| || || || ||||| || | ||||||||| || Sbjct 1154026 TACTCAATAATTTCAGTGCACAGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTTG 1154085 Query 114575 GACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGAC 114634 ||| ||| || ||||||||||| |||||| |||| | || ||||| || |||| | Sbjct 1154086 CTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCC 1154145 Query 114635 TTGAGAATAGCCTTCCAGA-CATCGGCGGCTGGCACAG--TGGCGTTGGCTCGCCCCTCC 114691 | ||||| || | ||| | || | | || | | || | ||| || | |||||| Sbjct 1154146 TCAAGAATGGCGTACCAAAGTTTCTGAGCCTTG-ATAGTCTTGCG-ACCCTTG-CCCTCC 1154202 Query 114692 TCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGT 114751 | |||||||||| ||| || || || ||||| || || | || | ||| || || Sbjct 1154203 TTCTCGTACTTTTCGTACAGAGCCTCGAACTCCTCTCCGTAGCAGTCGGCGAGGCCAGGG 1154262 Query 114752 GCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGG 114811 || | ||||| | || | ||| | || || ||||||||||||||||| || Sbjct 1154263 CACTCGTTGGGGCACATCAGCGTCCAGTCGCCGTTCTTTTCAACACGCTTCATGAAAAGA 1154322 Query 114812 TCTGGGATCCAGAGAGCTGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTG 114871 || |||||||| || || ||| || || || || | || || | || || || Sbjct 1154323 TCAGGGATCCAAAGGGCGAGGAAAAGGTCACGGGCACGGACCTCCTCTTTACCGTGGTTC 1154382 Query 114872 AGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATT 114931 ||| | || | || || | || ||| | |||||| || || ||||| | || | Sbjct 1154383 TTACGGAGATCAAGGAACTCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAA 1154442 Query 114932 G-AC-----CCCTTACGACGACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACG 114985 | || | ||| | | ||| |||||| ||||| | || ||| || || || Sbjct 1154443 GCACCGGGTCGCTT--GTTG-CCACCCTGGTCGACATAGCGAGCAGTGTTGTTGAAGACA 1154499 Query 114986 CGAAGCATTGGAATGATACCATCAGATTGGCCATTTGT-CCCCCGA-ATACGAGACTTAT 115043 |||||||| |||| | ||| | ||| || || || || ||| ||| ||| | | Sbjct 1154500 CGAAGCATAGGAACAACACCGTTCGATGTACCGTTGGTACCGGCGATATAGGAGCC--AG 1154557 Query 115044 TGGCTCTGACATCATGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGC 115103 | || | || | || | || || ||||||||| || ||| ||| ||||| || | Sbjct 1154558 TAGCACGGATACGGTGCACGTTCAGACCAATACCACCAGCCATCTTGGAGATCATGGCAC 1154617 Query 115104 ACTCCGTGAGACTGCCGTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGC 115163 | | ||||| | ||||||| || || || ||| |||| | | | | ||||| Sbjct 1154618 AGGTCTTGAGAGTATCGTAGATTCCCTCAATACTGTCGTCCTTCATATCAACCAAGAAGC 1154677 Query 115164 AGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGA 115223 | |||| ||| ||| || || || ||||||||||| || || | || || ||| Sbjct 1154678 AAGATGACAATTGGGGCTGAGGGGTGCCGGCGTTGAAGAGCGTGGGAGAGGCATGTGTGA 1154737 Query 115224 ACA--TACCTTGGGACATCTTATCGTAGGTCTCCAAGAC-GGCGGGAATGTCTTCCCCGT 115280 | | | || ||||||| | ||| ||||||||||| || | || || || || Sbjct 1154738 AGAATTTGCT--GGACATCAGGTTGTATGTCTCCAAGACTCGCTCG-ATATCATCACCCC 1154794 Query 115281 GAATACCGATCGAGACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGA 115340 |||||| | || || ||||| | ||||| || || || | | |||| || | Sbjct 1154795 AAATACCAACAGACACACGCATGATCATGTGCTGAGGGCGCTCGACAATCTTACCGTCAA 1154854 Query 115341 GCCTCTGGAGGTAACTCTTCTCCAAGGTCTTGAGACCAAAATA 115383 | | ||||||| |||||| ||||||| ||||| || Sbjct 1154855 TCTTGAGGAGGTATGATCGCTCCAAAGTCTTGAAGCCAAAGTA 1154897 >seq3193 Length=700513 Score = 190 bits (210), Expect = 2e-43 Identities = 540/818 (66%), Gaps = 25/818 (3%) Strand=Plus/Plus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 |||||| |||| ||||||||||||||||| ||||| || | | | ||| |||||||| Sbjct 692703 GTAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTCTCCAT 692762 Query 125818 AAAATCAAATGGGTTCTTTGAGTTCCAAA-----TTGTTGGCACCCCAATCTGTTTGAGG 125872 || || || ||||| | | || ||| | |||| |||| | ||| Sbjct 692763 GAAGTCGAAGGGGTTGGTGGCCTTGTAAACCTTCTCGTTG-----CCAAGCGCGACAAGG 692817 Query 125873 AGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGG 125932 |||||||| | |||| |||||||||||| ||| ||||||||||| |||| ||| Sbjct 692818 AGACGATCAGCGACGAACTCAATGTACTGCTTCATGAGGTCAGAGTTCATGCCGAGAAGG 692877 Query 125933 TTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATG 125992 ||| || || || || || |||| ||| |||||| ||||| || | ||| Sbjct 692878 GCACAGGGAAGAGCCTCAGTGAGGAACTCCTGCTCAATCGTGACGGCATCAGTAATGATA 692937 Query 125993 GCGTGAATGGTGTCCACCC---CAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCACGGCA 126049 | || || | | | | || | | ||| | || | || ||| || |||| Sbjct 692938 TCCTGGATCATCTGCTTGCTGGCACGACCCTTGAGGTGAGAGTGGAGGAGG--CA-GGCA 692994 Query 126050 AACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGC 126109 || || ||| |||||||| ||||| |||||||| || || |||||| ||| || ||| Sbjct 692995 AAGTCAGTGTGAAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCGGGC 693054 Query 126110 ATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCC 126169 |||||||| |||||||| | |||||| || | || | ||| ||||||||| ||| Sbjct 693055 ATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGCACCACTGAAGAAGATACCC 693114 Query 126170 TCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGT-GTCAAACCA 126228 || ||| ||||| |||| |||||||| ||||||||| | | | || | | | ||| Sbjct 693115 TCAACAGCAGCGAAAGCAACGAGACGCTGGGCAAAGGAG-GAGTCCTTATCCTGGATCCA 693173 Query 126229 CTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAG 126288 || ||||| | ||||| || ||| || |||| ||||| || || | |||||| Sbjct 693174 TCGGATGGCCCAGTCGGCCTTCTTTCGGATGCAGGGGATGGTCTCAATGGCGTTAAAGAG 693233 Query 126289 TTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCC 126348 | | | | || || |||||||| | || ||||| || || || ||| Sbjct 693234 GTAGGTTCGCTGGGCGGGCTCCTTGATGTAGGTGTCAATGAGCAGGGAGTAGGTCTCGGA 693293 Query 126349 GTGGACCAT-TTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTA 126407 ||||| | | ||| || | ||| | ||||||| | || || ||| ||||| | Sbjct 693294 GTGGATGTTCTCCATCAT-GATCTGGAAGCCGTAGAAGCAACGAGCCTCGGGGATCTGGA 693352 Query 126408 CCTCATCGGCAAAATTG-TTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAA 126466 |||| | | ||| | | || ||||| ||||| ||||| || |||| ||| Sbjct 693353 CCTC-GCCACTGAATCGCTCGACGAGGTTCTCGTTGACAATACCATCAGAGGCAGCGAAA 693411 Query 126467 AACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTTCCAGTCG 126523 || || ||||| | | ||| ||| |||| | ||| || | |||||||| Sbjct 693412 AAAGCAAGGATGTGAGAGACGAAGAACTGCTCATCGGCAGTCAGGCGGTTGTTCCAGTCA 693471 Query 126524 TCAAGATCCTTCGAGAGATCTACCTCCTCCGCAGTCCA 126561 | |||||||| || ||||| | |||||| |||||||| Sbjct 693472 TGGAGATCCTTGGAAAGATCAATCTCCTCAGCAGTCCA 693509 >seq1602 Length=525257 Score = 86.0 bits (94), Expect = 7e-12 Identities = 162/234 (69%), Gaps = 12/234 (5%) Strand=Plus/Plus Query 171941 CCACACGGTTCAAGGAGATTGATATTGTTTGAACCCATGTAGTCATTGGCCAACTTGACA 172000 |||| ||||| || ||||| ||||||||||| | | ||| | ||||| | || Sbjct 293508 CCACTGGGTTCCAGACAGTTGATGTTGTTTGAACCGACGAAGTTCTGGGCCAG---GCCA 293564 Query 172001 ATCGTA-TCCGCGAGGGAGACT--TCACCGTGATGGTAGGCCGACTTGTCCGCGACATAC 172057 || || || | | |||||| ||||||||||||||||| | || || | |||||| Sbjct 293565 ATGATAGTCTGTTGGAGAGACTGTTCACCGTGATGGTAGGCAGTCTGCTCAGAGACATAA 293624 Query 172058 GCCGCCAACTGTGCCACCTTCATCTCATCCTTG---AGGTTCTTGTGGAAGCACGCATAC 172114 | ||||| | | |||| ||| ||| ||| ||||| | | |||||| ||||| Sbjct 293625 CCAGCCAATTCAACGACCT---TCTTATCTTTGACCAGGTTTCTCTTGAAGCAGGCATAT 293681 Query 172115 ATGACCTTTCTCTGTGAAGGCTTGAGGCCGTCGGCCATGTGCGCGATGGAACGC 172168 |||||||| | ||| |||||||| ||| || || | || |||||| ||| Sbjct 293682 ATGACCTTACGCTGACCAGGCTTGAAGCCATCCAGCACGGACGGGATGGATCGC 293735 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597326465212720