Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702555 .1_202016-08-10] 3,634 sequences; 56,857,404 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq3193 196 6e-45 seq2380 159 4e-34 >seq3193 Length=700513 Score = 196 bits (216), Expect = 6e-45 Identities = 539/817 (66%), Gaps = 23/817 (3%) Strand=Plus/Plus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 |||||| | || ||||||||||||||||| ||||| ||| | ||| ||| |||||||| Sbjct 692703 GTAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTCTCCAT 692762 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAA-----TTGTTGGCACCCCAATCTGTTTGAGG 127345 || || || ||||| | | || ||| | |||| |||| | ||| Sbjct 692763 GAAGTCGAAGGGGTTGGTGGCCTTGTAAACCTTCTCGTTG-----CCAAGCGCGACAAGG 692817 Query 127346 AGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGG 127405 |||||||| | |||| |||||||||||| ||| ||||||||||| |||| ||| Sbjct 692818 AGACGATCAGCGACGAACTCAATGTACTGCTTCATGAGGTCAGAGTTCATGCCGAGAAGG 692877 Query 127406 TTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATG 127465 ||| || || || || || |||| ||| |||||| || || || | ||| Sbjct 692878 GCACAGGGAAGAGCCTCAGTGAGGAACTCCTGCTCAATCGTGACGGCATCAGTAATGATA 692937 Query 127466 GCGTGAATAGTGTCCACCC---CAGGTCTATTGCGTAAAGTCTTGAAGAGTTCCACAGCA 127522 | || || | | | | || | | ||| | || | || ||| || ||| Sbjct 692938 TCCTGGATCATCTGCTTGCTGGCACGACCCTTGAGGTGAGAGTGGAGGAGG--CAG-GCA 692994 Query 127523 AACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGC 127582 || || ||| |||||||| ||||| |||||||| || || |||||| |||||| ||| Sbjct 692995 AAGTCAGTGTGAAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCGGGC 693054 Query 127583 ATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCC 127642 |||||||| |||||||| | |||||| || | || | ||| ||||||||| ||| Sbjct 693055 ATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGCACCACTGAAGAAGATACCC 693114 Query 127643 TCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCAC 127702 || ||| ||||| |||| ||||||| |||||||||| | ||| | | ||| Sbjct 693115 TCAACAGCAGCGAAAGCAACGAGACGCTGGGCAAAGGAGGAGTCCTTATCCTGGATCCAT 693174 Query 127703 TTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGT 127762 || ||||| | ||||| || ||| || |||| ||||| || || | |||||| Sbjct 693175 CGGATGGCCCAGTCGGCCTTCTTTCGGATGCAGGGGATGGTCTCAATGGCGTTAAAGAGG 693234 Query 127763 TCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCG 127822 | | | | || || |||||||| | || ||||| || || || ||| | Sbjct 693235 TAGGTTCGCTGGGCGGGCTCCTTGATGTAGGTGTCAATGAGCAGGGAGTAGGTCTCGGAG 693294 Query 127823 TGGACCAT-TTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTAC 127881 |||| | | ||| || | ||| | ||||||| | || || ||| ||||| || Sbjct 693295 TGGATGTTCTCCATCAT-GATCTGGAAGCCGTAGAAGCAACGAGCCTCGGGGATCTGGAC 693353 Query 127882 CTCATCGGCAAAATTG-TTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAA 127940 ||| | | ||| | | || ||||| ||||| ||||| || |||| |||| Sbjct 693354 CTC-GCCACTGAATCGCTCGACGAGGTTCTCGTTGACAATACCATCAGAGGCAGCGAAAA 693412 Query 127941 ACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTTCCAGTCGT 127997 | || ||||| | | ||| ||| |||| | ||| || | |||||||| | Sbjct 693413 AAGCAAGGATGTGAGAGACGAAGAACTGCTCATCGGCAGTCAGGCGGTTGTTCCAGTCAT 693472 Query 127998 CGAGATCCTTTGAGAGATCTACCTCCTCCGCAGTCCA 128034 ||||||||| || ||||| | |||||| |||||||| Sbjct 693473 GGAGATCCTTGGAAAGATCAATCTCCTCAGCAGTCCA 693509 >seq2380 Length=1938854 Score = 159 bits (176), Expect = 4e-34 Identities = 1164/1848 (63%), Gaps = 55/1848 (3%) Strand=Plus/Plus Query 115526 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 115585 |||||||||| || || |||| || || ||||||||||| || |||||||| | Sbjct 1153076 TGAACTGAATAGGAGCAGCAGCAGCCTGTGTACGAAGGTAGTACATGCCAGTCTTGAGGC 1153135 Query 115586 CCTGCTTCCAGGCATACATA-TGCATTGAGGACAACTTGGAGAGTGTTGGACTTTCCATG 115644 | |||||||| | | || | ||||| || | |||| | || || || |||| Sbjct 1153136 CAAGCTTCCAGCC-TGCAAAGTGCATACTGGTGATCTTGCCCATCGTGGGGTCTTTCATG 1153194 Query 115645 AAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATC 115704 || ||||| ||||| ||||| |||||| || ||||| || ||||| | || Sbjct 1153195 TGGATGTTCAGTGACTGGGACTGATCAATGAAGGCACCTCGATCAGCAGCCATCTGAACG 1153254 Query 115705 ACATCCTTCATCTTGATTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGGATA 115764 || | | ||| ||||| || || | || || ||| | ||| | ||||| Sbjct 1153255 ACTTGGCGCTGAGAGATCTCCCAAACGGTCTTATACAGAGCCTTGACATCGGCAGGGATG 1153314 Query 115765 TCCACGATATTTTGGATAGAGCCAC---CTGCCTTGACCATGAGATCCTTCATATCCTTT 115821 | || || || || || ||| | || ||| || | | ||||||| | | Sbjct 1153315 TTGGGAATGTTCTGAATGGAACCATTCTCAGCAATGA---TGCGGTTCTTCATAGCATCG 1153371 Query 115822 GACCAGAGACCAATCTTCTTGAGATCCTCCA----CGAGGTGCTTATTGACAACAACAAA 115877 ||||| ||||| || | || |||| | | ||| | |||||||| || Sbjct 1153372 GACCACAGACCCATGTCGACAAGGTCCTTGAGCAGCCAGGGG----TTGACAACCTGGAA 1153427 Query 115878 CTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTATGGCTCAAAGCACTCATT 115937 |||||| ||||| |||| | |||||||||| ||||| ||||| |||||||| || Sbjct 1153428 CTCACCAGCGAGAACACGTCGTTGGTAGATGTTGGAGGTGTAGGGCTCGAAGCACTCGTT 1153487 Query 115938 GTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCG 115997 ||| |||| || |||| || ||| || ||||| || || | ||| || ||||| || Sbjct 1153488 GTTGCCCAGAATCTGGGAGGTACTGGCAGTAGGCATAGGAGCAAGGAGCAGACTGTTACG 1153547 Query 115998 GAGACCCACCCCCCTAATGCGTTC-CTTGAGG-GCGTCCCAGTCGTAGTTGAGCTTTGTC 116055 || || | | | | | | || || | | |||||||| || | | | Sbjct 1153548 GATGCCGTGTGTCTTGA--CTTCCTCTCGAAGAGTCTCCCAGTCCCAGAGGTCAGAGGGC 1153605 Query 116056 TCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTC 116115 | | | |||||| || |||||||||||||| | || || || || || | || || Sbjct 1153606 TTGACGTTCCACATGTCGAACTGGAGGATACCCTCAGAGGCGGGGGAACCTTTGAAGGTG 1153665 Query 116116 TCATATGGGCCCTCAACCTCCGCCAATT---CGGAGCTCGCCTCGAGGGCTGCGTGATAC 116172 || || ||||| ||| |||| | ||||| || |||||| ||||| || Sbjct 1153666 GAGTAGGGACCCTCCTCCTTAGCCAGCTGCACGGAG---GCAGTGAGGGCAGCGTGGTAA 1153722 Query 116173 ATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGG 116232 || ||||| || || | || | | |||||| || || || | | || Sbjct 1153723 ATGGTCTCGAAGATCTGCTTGTTGAGCTCACGAGCCTCGGGTGACTCGAAGGGCATGCG- 1153781 Query 116233 CACAA-AATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCAT 116291 || | || || |||| || || || || ||||| || ||||| || || || | ||| Sbjct 1153782 CAGAGCAAGGAAAGCATCGGCAAGGCCCTGAACACCAAGACCAATGGGTCGGTGGCGCAT 1153841 Query 116292 ATTAGACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATT 116351 ||| || ||||| || || || || ||| |||||| | | | || || || Sbjct 1153842 GTTACTGTTGCGAGCCTCCTGGACAGGGTAGTGGTTCACATCGATGATCTTGTTCAGGTT 1153901 Query 116352 TTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTC 116411 | ||||||| ||| | || | ||| | | | || | || || ||| || Sbjct 1153902 GCGAATAACAACCTGACTGACCTTGTGCAACTTCTTGAAGTCGTA---GCAAGCCTCATC 1153958 Query 116412 AT---TGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTT 116468 | ||| | || || || | || || || || || |||| | ||| || Sbjct 1153959 GTAGTTGATGAAAGAGGGCAGAGCCAGAGAGGCAAGGTTGCAGACAGCGACCTCGTCAGG 1154018 Query 116469 ATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTT 116528 || |||||| |||||||| || |||| || || || ||||| || | |||||| Sbjct 1154019 GGCACAGTACTCAATAATTTCAGTGCACAGGTTGGAGCTTCGGATGGTACCGAGGTTCTT 1154078 Query 116529 TTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGT 116588 ||| || ||| ||| || ||||||||||||||||| |||| | || ||||| || Sbjct 1154079 TTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCAGT 1154138 Query 116589 TTGGGACTTGAGAATAGCCTTCCATA-CATCGGCGGCTGGCACAG--TGGCGTTGGCTCG 116645 |||| || ||||| || | ||| | || | | || | | || | ||| || | Sbjct 1154139 CTGGGCCTCAAGAATGGCGTACCAAAGTTTCTGAGCCTTG-ATAGTCTTGCG-ACCCTTG 1154196 Query 116646 CCCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGC-CTCTGAGA 116704 ||||||| |||||||||| ||| || ||||| ||||| || || ||| || | || Sbjct 1154197 -CCCTCCTTCTCGTACTTTTCGTACAGAGCCTCGAACTCCTC-TCCGTAGCAGTCGGCGA 1154254 Query 116705 GCCCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCA 116764 | || || || | || || | || | ||| | || || ||||| ||||||| Sbjct 1154255 GGCCAGGGCACTCGTTGGGGCACATCAGCGTCCAGTCGCCGTTCTTTTCAACACGCTTCA 1154314 Query 116765 TGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCC 116824 |||| || || |||||||| || || ||| || || || || | || || | | Sbjct 1154315 TGAAAAGATCAGGGATCCAAAGGGCGAGGAAAAGGTCACGGGCACGGACCTCCTCTTTAC 1154374 Query 116825 CCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACA 116884 | || || ||| | || | || || | || ||| | |||||| || || ||||| | Sbjct 1154375 CGTGGTTCTTACGGAGATCAAGGAACTCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGA 1154434 Query 116885 CCGCGATTG-ACC-CCTTGC--GACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTA 116940 || | | ||| | || | | ||| |||||| ||||| | || || ||| Sbjct 1154435 TGGCAAAAGCACCGGGTCGCTTGTTG-CCACCCTGGTCGACATAGCGAGCAGTGTTGTTG 1154493 Query 116941 AATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGT-CCCCCGA-ATACGAG 116998 || || |||||||| |||| | ||| | ||| || || || || ||| ||| ||| Sbjct 1154494 AAGACACGAAGCATAGGAACAACACCGTTCGATGTACCGTTGGTACCGGCGATATAGGAG 1154553 Query 116999 ACTTGTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTT 117058 | | || | || | ||| | || || ||||||||| || ||| ||| ||||| Sbjct 1154554 CC--AGTAGCACGGATACGGTGCACGTTCAGACCAATACCACCAGCCATCTTGGAGATCA 1154611 Query 117059 GTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGA 117118 || || | ||||| | ||||||| || || || ||| |||| | | | | Sbjct 1154612 TGGCACAGGTCTTGAGAGTATCGTAGATTCCCTCAATACTGTCGTCCTTCATATCAACCA 1154671 Query 117119 GGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGT 117178 |||||| |||| ||| ||| || || || ||||||||||| || || | || | Sbjct 1154672 AGAAGCAAGATGACAATTGGGGCTGAGGGGTGCCGGCGTTGAAGAGCGTGGGAGAGGCAT 1154731 Query 117179 GGATGAACA--TACCTTGGGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTC 117236 | |||| | | || ||||||| | ||| ||||||||||| || || || Sbjct 1154732 GTGTGAAGAATTTGCT--GGACATCAGGTTGTATGTCTCCAAGACTCGCTCGATATCATC 1154789 Query 117237 CCCGTGAATACCGATTGAGACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACC 117296 || |||||| | || || ||||| | ||||| || || || | | |||| Sbjct 1154790 ACCCCAAATACCAACAGACACACGCATGATCATGTGCTGAGGGCGCTCGACAATCTTACC 1154849 Query 117297 ATCGAGCCTCTGGAGGTAACTCTTCTCCAAGGTCTTGAGACCAAAATA 117344 || | | | ||||||| |||||| ||||||| ||||| || Sbjct 1154850 GTCAATCTTGAGGAGGTATGATCGCTCCAAAGTCTTGAAGCCAAAGTA 1154897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613479331435440