Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702555 .1_202016-08-10] 3,634 sequences; 56,857,404 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq3193 192 6e-44 seq3215 122 9e-23 seq3413 114 1e-20 seq3314 113 5e-20 >seq3193 Length=700513 Score = 192 bits (212), Expect = 6e-44 Identities = 377/553 (68%), Gaps = 11/553 (2%) Strand=Plus/Plus Query 132894 GCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAA 132953 ||| |||||||| || | ||||| || | || ||||| |||||| ||| |||| Sbjct 692988 GCAGGCAAAGTCAGTGTGAAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAG 693047 Query 132954 GCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAA 133013 ||||||||||| || || || |||||||| || || | |||||| || ||||| Sbjct 693048 ACCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGCACCACTGAAGAA 693107 Query 133014 GACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTC--TTTGCTG 133071 || ||||| || || |||||||| || || |||| | | || | || || | | ||| Sbjct 693108 GATACCCTCAACAGCAGCGAAAGCAACGAGACGCTGGGCAAAGGAGGAGTCCTTATCCTG 693167 Query 133072 GCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCG 133131 |||||| || | ||||| |||||||| | | || ||| || || || || |||||| Sbjct 693168 --GATCCATCGGATGGCCCAGTCGGCCTTCTTTCGGATGCAGGGGATGGTCTCAATGGCG 693225 Query 133132 TTCAACAAACGGAGTTTCTCTTCCGAGGAAC--GCACGTAGGTGTCGATGAGGGTCGAAT 133189 || | | | | || ||| || || | | ||||||||| ||||| || | Sbjct 693226 TT--AAAGAGGTAGGTTCGCTGGGCGGGCTCCTTGATGTAGGTGTCAATGAGCAGGGAGT 693283 Query 133190 ACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGA 133249 | | || ||||| | ||||||||| ||| || |||||||| ||||| || |||||| Sbjct 693284 AGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAACGAGCCTCGG 693343 Query 133250 CCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGG 133309 | ||| || || | ||| |||||||| || || |||||||| || || || || Sbjct 693344 GGATCTGGACCTCGCCACTGAATCGCTCGACGAGGTTCTCGTTGACAATACCATCAGAGG 693403 Query 133310 CGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCG---CT 133366 | |||||||| || || | ||| || ||| |||| | | | ||| ||| | Sbjct 693404 CAGCGAAAAAAGCAAGGATGTGAGAGACGAAGAACTGCTCATCGGCAGTCAGGCGGTTGT 693463 Query 133367 CCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGG 133426 |||||| | |||||||| || || | |||||| | ||||| || || ||||| | Sbjct 693464 TCCAGTCATGGAGATCCTTGGAAAGATCAATCTCCTCAGCAGTCCAGAAGGAAGCCTCAG 693523 Query 133427 CTTTTTTGTACAT 133439 | || |||||||| Sbjct 693524 CCTTCTTGTACAT 693536 >seq3215 Length=308419 Score = 122 bits (134), Expect = 9e-23 Identities = 160/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| || || |||||||| || || |||||| | || || ||| | Sbjct 30937 AAGATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 30996 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 |||||| | | | |||| | || || |||| ||||| ||||| || ||| | || Sbjct 30997 TCCGACACCATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGA 31055 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||||| ||||| | || ||||| ||||| || || | |||||||| | |||||| Sbjct 31056 CCAGCAGCGACTCATCTTTGCTGGCAAGCAGCTCGAGGATGGACGCACCCTGAGCGACTA 31115 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||||||| ||||| | || || || |||| || || Sbjct 31116 CAACATCCAGAAGGAGTCCACCCTCCACCTGGTCCTCCG 31154 >seq3413 Length=699090 Score = 114 bits (126), Expect = 1e-20 Identities = 134/181 (74%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || || || |||||||| ||||||||| |||| |||||| || | |||| | | Sbjct 500350 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATC 500291 Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372 | | | || || |||| ||||| ||||| |||||| | ||||||||||| || Sbjct 500290 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAACAGCGACTG 500231 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432 || | ||| || || ||||| || || | || || ||| ||||||||||||||| ||| Sbjct 500230 ATCTTCGCTGGTAAGCAGCTCGAGGATGGCCGAACTCTCTCCGACTACAACATCCAGAAG 500171 Query 38433 G 38433 | Sbjct 500170 G 500170 >seq3314 Length=1526608 Score = 113 bits (124), Expect = 5e-20 Identities = 158/218 (72%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || ||||| || || ||||| || | || |||||| | || Sbjct 659166 ATGCAAATCTTCGTCAAGACCCTCACTGGAAAGACCATTACTCTGGAAGTCGAGTCATCC 659107 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 || | | | | || | | |||| || |||| ||||| ||||| ||||| |||| | Sbjct 659106 GATACCATTGATAATG--TGAAGAGCAAGATCCAGGACAAGGAGGGTATTCCTCCCGATC 659049 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 ||||||| ||||| | ||| ||||| || || || || | || || || |||||||| Sbjct 659048 AACAGCGACTCATCTTCGCTGGCAAGCAACTTGAAGATGGCCGAACTCTTTCCGACTACA 658989 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||| || |||||| | || || || ||||| || ||| Sbjct 658988 ACATTCAGAAGGAATCTACTCTCCACTTGGTTCTCCGT 658951 Score = 109 bits (120), Expect = 5e-19 Identities = 142/193 (74%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || ||||| || || ||||||||| | || |||||| ||| Sbjct 658938 ATGCAGATTTTTGTGAAGACTCTCACCGGAAAGACCATCACCCTTGAGGTCGAGTCCAGT 658879 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | |||| | |||| || || | ||||| ||||| |||||| | || | Sbjct 658878 GACACTATCGACAACG--TGAAGAGCAAGATTCAGGACAAGGAGGGTATTCCCCCTGATC 658821 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 ||||||| || || | ||| || || ||| |||| || | |||||| | | |||||||| Sbjct 658820 AACAGCGTCTTATCTTCGCTGGTAAGCAGTTGGAAGATGGTCGCACCTTGAGCGACTACA 658761 Query 38422 ACATCCAAAAGGA 38434 ||||||| ||||| Sbjct 658760 ACATCCAGAAGGA 658748 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 38250 ATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGC 38309 ||| |||| || || ||||| ||||| ||||||||| | || |||||| | |||| | | Sbjct 659388 ATAGTCGTCAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTCGAGTCGTCCGATACC 659329 Query 38310 GTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGG 38369 | | | |||| ||| || | ||||| ||||| || || | ||||| ||||| Sbjct 659328 ATCGACAATGTTAAGTCAAAGATTCAGGACAAGGAGGGCATCCCTCCTGACCAGCAGCGT 659269 Query 38370 CTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAA 38429 || || | || || || || || || || | || ||||| |||||||||||| || Sbjct 659268 CTGATCTTTGCTGGAAAGCAACTCGAAGATGGCCGAACCCTTGCCGACTACAACATTCAG 659209 Query 38430 AAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||| | || || ||| | || || || Sbjct 659208 AAGGAATCTACCCTTCATCTCGTCCTCCG 659180 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500150079650560