Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702555
.1_202016-08-10] 3,634 sequences; 56,857,404 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq3314 154 3e-32
seq3215 143 6e-29
seq3413 138 3e-27
>seq3314
Length=1526608
Score = 154 bits (170), Expect = 3e-32
Identities = 160/210 (76%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990
||||||||||||||||||||| || ||||| |||||||| | ||||| | || || ||
Sbjct 659467 AACAAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGAGAGAGTGCGGCCGTCCTC 659526
Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050
|||||||| || ||||| || | ||||| ||||| || |||||||| || ||||| ||
Sbjct 659527 AAGCTGCTTGCCGGCGAAAATCAAGCGTTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTG 659586
Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110
||| || |||||| || || || ||||| ||| || || || ||||| | |||||
Sbjct 659587 AATCTTGGACTTGACATTGTCGATAGTGTCGGAAGACTCAACCTCGAGGGTGATGGTCTT 659646
Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| ||||| || || ||||| | |||||
Sbjct 659647 GCCGGTCAAGGTCTTGACGAAGATCTGCAT 659676
Score = 134 bits (148), Expect = 3e-26
Identities = 165/221 (75%), Gaps = 6/221 (3%)
Strand=Plus/Plus
Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCG-GCAAGAGTTCT 194981
|||| | ||| ||||||||||| ||||| || || || ||||| ||| |||| || |
Sbjct 658721 AGTCGGAGAACGAGGTGAAGAGTTGACTCCTTCTGGATGTTGTAGTCGCTCAAG-GTGCG 658779
Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041
|||||||| | ||||||||| ||||||||||| || ||||| || || ||||| || ||
Sbjct 658780 ACCATCTTCCAACTGCTTACCAGCGAAGATAAGACGCTGTTGATCAGGGGGAATACCCTC 658839
Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGT--CCGAACTTTCCACTTCAAGG 195099
||||| ||||| || ||| ||||| || || |||| | | || || || ||||||
Sbjct 658840 CTTGTCCTGAATCTTGCTCTTCACGTTGTCGATAGTGTCACTGGAC--TCGACCTCAAGG 658897
Query 195100 GTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| | |||||||| || | ||| || || || | |||||
Sbjct 658898 GTGATGGTCTTTCCGGTGAGAGTCTTCACAAAAATCTGCAT 658938
Score = 134 bits (148), Expect = 3e-26
Identities = 149/199 (75%), Gaps = 0/199 (0%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| || ||||| || || || || ||||| ||||| |||||||| |||| |||||||||
Sbjct 659186 ACGAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCGGCAAGGGTTCGGCCATCTTCG 659245
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|| ||||| || || ||||| || || || ||||| ||||| ||||| || ||||| |||
Sbjct 659246 AGTTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGA 659305
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| ||| ||| || || || ||||| || || || || |||||||| | |||||
Sbjct 659306 ATCTTTGACTTAACATTGTCGATGGTATCGGACGACTCGACCTCAAGGGTGATGGTCTTG 659365
Query 195112 CCTGTCAAAGTTTTTACGA 195130
|| || | || || ||||
Sbjct 659366 CCAGTGAGGGTCTTGACGA 659384
>seq3215
Length=308419
Score = 143 bits (158), Expect = 6e-29
Identities = 157/209 (75%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| ||||| || |||||||| || || || ||||| ||| || || | ||||| |||
Sbjct 31148 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGTCCATCCTCG 31089
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| || || ||||| ||||| || ||||| || || ||||| || ||||| ||
Sbjct 31088 AGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 31029
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| || ||||||||| || |||||||| ||| ||||| |||||||| | ||||||
Sbjct 31028 ATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTC 30969
Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| || | || || ||||| | |||||
Sbjct 30968 CCCGTGAGGGTCTTGACGAAAATCTGCAT 30940
>seq3413
Length=699090
Score = 138 bits (152), Expect = 3e-27
Identities = 138/179 (77%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012
|| || || ||||| |||| ||||||| ||||| |||||||||||||| ||||||||
Sbjct 500172 TTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCGAGCTGCTTACCAGCGAAGATC 500231
Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072
||||| |||||||| || |||||||| || ||||| || || || |||||| || ||
Sbjct 500232 AGTCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 500291
Query 195073 ATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAA 195131
||||||||||| || || || ||||| | ||||| || |||| || || |||||
Sbjct 500292 ATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 500350
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109429941843278
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |