Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702555
.1_202016-08-10] 3,634 sequences; 56,857,404 total letters
Query= NC_020104.1
Length=1021348
Score E
Sequences producing significant alignments: (Bits) Value
seq3314 123 2e-22
>seq3314
Length=1526608
Score = 123 bits (136), Expect = 2e-22
Identities = 161/220 (73%), Gaps = 2/220 (1%)
Strand=Plus/Plus
Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610
|||||||||||| || | || || ||| ||| || || || || || | |||||
Sbjct 658945 ACGAAGACGGAGAACCAAGTGGAGAGTAGATTCCTTCTGAATGTTGTAGTCGGAAAGAGT 659004
Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670
|| | ||||||||||||||| ||||| || || || || |||||||| |||||||| ||
Sbjct 659005 TCGGCCATCTTCAAGTTGCTTGCCAGCGAAGATGAGTCGCTGTTGATCGGGAGGAATACC 659064
Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729
|||||||| || ||||| || ||| ||||| ||||| | || | | ||| |
Sbjct 659065 CTCCTTGTCCTGGATCTTGCTCTTCACATTATCAATGGTATCGGATGACTCGA-CTTCCA 659123
Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
| ||||| || || || ||||| ||||| ||||| |||||
Sbjct 659124 GAGTAATGGTCTTTCCAGTGAGGGTCTTGACGAAGATTTG 659163
Score = 120 bits (132), Expect = 2e-21
Identities = 156/213 (73%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610
||| || ||||| || |||||||| ||| ||| || || || || || || || ||
Sbjct 659173 ACGGAGGCGGAGGACGAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCGGCAAGGGT 659232
Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670
|| | |||||| ||||||||||||||||| || ||||| || || |||||||| || ||
Sbjct 659233 TCGGCCATCTTCGAGTTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGGATGCC 659292
Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729
|||||||| ||||||||| || ||| || || ||||| | | | | ||||
Sbjct 659293 CTCCTTGTCCTGAATCTTTGACTTAACATTGTCGATGGTATCGGACGACTCGA-CCTCAA 659351
Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGA 480762
|||| || || || || ||||| ||||| ||||
Sbjct 659352 GGGTGATGGTCTTGCCAGTGAGGGTCTTGACGA 659384
Score = 100 bits (110), Expect = 2e-15
Identities = 114/153 (75%), Gaps = 0/153 (0%)
Strand=Plus/Plus
Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676
|||||| | ||||| ||||| || |||||||| ||||||||||| ||||| || |||||
Sbjct 658783 ATCTTCCAACTGCTTACCAGCGAAGATAAGACGCTGTTGATCAGGGGGAATACCCTCCTT 658842
Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736
||| |||||||| || || || ||||| ||| || |||||||| ||
Sbjct 658843 GTCCTGAATCTTGCTCTTCACGTTGTCGATAGTGTCACTGGACTCGACCTCAAGGGTGAT 658902
Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
|| || |||||||||||||| || ||||| ||
Sbjct 658903 GGTCTTTCCGGTGAGAGTCTTCACAAAAATCTG 658935
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3268023320107832
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |