Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702555 .1_202016-08-10] 3,634 sequences; 56,857,404 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq2380 183 9e-41 seq3193 154 4e-32 seq1846 107 6e-18 seq1001 95.1 4e-14 >seq2380 Length=1938854 Score = 183 bits (202), Expect = 9e-41 Identities = 574/879 (65%), Gaps = 15/879 (2%) Strand=Plus/Plus Query 155630 GTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTT 155689 ||| || | ||| ||| ||||||||| || || |||||| || | ||||| ||||| Sbjct 1154025 GTACTCAATAATTTCAGTGCACAGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTT 1154084 Query 155690 AGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGC 155749 || | ||| || ||||||||||| || ||| ||||| |||| ||||| |||| || Sbjct 1154085 GCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGC 1154144 Query 155750 GTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGA 155809 || ||||| ||| || | | || || || |||| |||| ||| Sbjct 1154145 CTCAAGAATGGCGTACCAAAGTTTCTGAGCCTTGATAGTCTTGCGACCCTTGCCCTCCTT 1154204 Query 155810 CTCATA--TTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGG 155867 ||| || |||| || | ||| | | | ||||| ||||| || || || |||||| Sbjct 1154205 CTCGTACTTTTCGTACAGAGCCTC--GAACTCCTCTCCGTAGCAGTCGGCGAGGCCAGGG 1154262 Query 155868 CACTTATCGGGGCAAAACAGCGACCAAATTTTATTACCGATT--ACACGCTCCATAAATA 155925 |||| | |||||| | ||||| ||| || | || ||||||| ||| || | Sbjct 1154263 CACTCGTTGGGGCACATCAGCGTCCAGTCGCCGTT--CTTTTCAACACGCTTCATGAAAA 1154320 Query 155926 CATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGAT 155985 |||| ||||| || ||||||||| | || |||||| | ||||| | Sbjct 1154321 GATCAGGGATCCAAAGGGCGAGGAAAAGGTCACGGGCACGGACCTCCTCTTTACCGTGGT 1154380 Query 155986 TCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAA 156045 |||| || || || | ||| || | ||||| || ||||| || || || |||| Sbjct 1154381 TCTTACGGAGATCAAGGAACTCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAA 1154440 Query 156046 AACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACAC 156102 || ||| | |||| |||||||| || ||||| |||||||| || |||||||||| Sbjct 1154441 AAGCACCGGGTCGCTTGTTGCCACCCTGGTCGACATAGCGAGCAGTGTTGTTGAAGACAC 1154500 Query 156103 CTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATG 156162 |||||||||| || ||| || || || || ||||| ||| |||| || |||| | Sbjct 1154501 GAAGCATAGGAACAACACCGTTCGATGTACCGTTGGTACCGGCGATATAGGAGCCAGTAG 1154560 Query 156163 AGCGAACATTATGAATATGTAGTCCAATACCACCTGACCAT-TTAGAAATTTGAGCGCAT 156221 || | | || | | || ||||||||||| | |||| || || || || || Sbjct 1154561 CACGGATACGGTGCACGTTCAGACCAATACCACCAG-CCATCTTGGAGATCATGGCACAG 1154619 Query 156222 TCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCAT-TGATAGTAGATAGCA 156280 ||| | ||||| | | || || |||||| || || | ||| | | ||| |||| Sbjct 1154620 GTCTTGAGAGTATCGTAGATTCCCTCAATACTGTCGTCCTTCATATCAACCAAGA-AGCA 1154678 Query 156281 CGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAA 156340 || ||||| || | || || || |||||||| || || || | ||||| | || Sbjct 1154679 AGATGACAATTGGGGCTGAGGGGTGCCGGCGTTGAAGAGCGTGGGAGAGGCATGTGTGAA 1154738 Query 156341 ATACTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTGAAT 156400 | || | ||||| | |||||||||| | ||| | || | || ||| Sbjct 1154739 GAATTTGCTGGACATCAGGTTGTATGTCTCCAAGACTCGCTCGATATCATCACCCCAAAT 1154798 Query 156401 ACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATTCG 156460 || | ||| || | ||| ||| |||||||| ||||| |||||| || ||||| Sbjct 1154799 ACCAACAGACACACGCATGATCATGTGCTGAGGGCGCTCGACAATCTTACCGTCAATCTT 1154858 Query 156461 CAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATA 156499 || ||||||| || |||| ||| || || || || || Sbjct 1154859 GAGGAGGTATGATCGCTCCAAAGTCTTGAAGCCAAAGTA 1154897 >seq3193 Length=700513 Score = 154 bits (170), Expect = 4e-32 Identities = 467/717 (65%), Gaps = 6/717 (1%) Strand=Plus/Minus Query 133232 GCGTTTTTTGCTGCGAGTGATGGTATTGTTCTTGAAAATTTAGGAACACGGTTTATGGGA 133291 || ||||| ||||| |||||||||||| || || | | || || | || Sbjct 693416 GCTTTTTTCGCTGCCTCTGATGGTATTGTCAACGAGAACCTCGTCGAGCGATTCAGTGGC 693357 Query 133292 GAAGTTCAACTGGCCGAAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATC 133351 || || || | |||| || ||| ||| || || | ||||| |||||| || ||| Sbjct 693356 GAGGTCCAGATCCCCGAGGCTCGTTGCTTCTACGGCTTCCAGATCATGATGGAGAACATC 693297 Query 133352 CATTCTATCACATATTCTACTCTAATTGATACTTACATCAAAGATACCGTCCAGAAGCAC 133411 || || || || || || ||||| || |||||||| || ||| |||| | Sbjct 693296 CACTCCGAGACCTACTCCCTGCTCATTGACACCTACATCAAGGAGCCCGCCCAGCGAACC 693237 Query 133412 AAACTATTCAACGCCATTAGCGAATTTCCT-TGTATTAAAAAGAAATCTGACTGGGCTAT 133470 | || || ||||||||| | || ||| || || |||||| | |||||||| || Sbjct 693236 TACCTCTTTAACGCCATT-GAGACCATCCCCTGCATCCGAAAGAAGGCCGACTGGGCCAT 693178 Query 133471 TAAATGGATCCAGGACAAGCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGT 133530 |||||||||||| ||| | ||||| |||||||||||||| |||| || Sbjct 693177 CCGATGGATCCAGGATAAGGACTCCTCCTTTGCCCAGCGTCTCGTTGCTTTCGCTGCTGT 693118 Query 133531 AGAGGGCAtttttttCAGTGGTGCGTTCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTAT 133590 ||||| || || ||||||||||| ||| |||||| || ||||| || ||||||||| | Sbjct 693117 TGAGGGTATCTTCTTCAGTGGTGCCTTCGCCTCTATCTTCTGGCTCAAGAAGCGTGGTCT 693058 Query 133591 TCTACCTGGACTGTGTTTTTCTAACGAACTTATTTCAAGGGACGAGGCACTTCACACCGA 133650 | || || ||| || || ||||| || || || | || |||| |||||||| || Sbjct 693057 CATGCCCGGTCTGACCTTCTCCAACGAGCTCATCTCTCGTGATGAGGGTCTTCACACTGA 692998 Query 133651 ATTTGCCGTTTTACTTCACTCTAAATTAGAGCGACCACTCAAAAAGAATAAGATTGAAGA 133710 |||||| | || |||||| | | || | | || ||| | | ||| | || Sbjct 692997 CTTTGCCTGCCTCCTCCACTCTCACCTCAAGGGTCGTGCCAGCAAGCAGATGATCCAGGA 692938 Query 133711 AATTATTAGAGAAGCGGTTGAAATTGAGGTTGAATTTATCAATAGTGCTCTGCC--GTGC 133768 || |||| || || || |||||| || || ||| | ||||| || |||| Sbjct 692937 TATCATTACTGATGCCGTCACGATTGAGCAGGAGTTCCTCACTGAGGCTCTTCCCTGTGC 692878 Query 133769 CGTTTAATTGGTATGAATGATGTGCTGATGCAGCGTTATATTGAATTTGTAGCTGACAGA 133828 | || | || ||||| || || ||| ||| || ||||| || || ||||| | Sbjct 692877 CCTT--CTCGGCATGAACTCTGACCTCATGAAGCAGTACATTGAGTTCGTCGCTGATCGT 692820 Query 133829 TTGGCCGTTCAGTTAGGTGGGGATAAGATTTACGGTTCCGCCAATCCATTCGACTGGATG 133888 | || | | || || ||| ||||| || |||| || ||||||| ||| Sbjct 692819 CTCCTTGTCGCGCTTGGCAACGAGAAGGTTTACAAGGCCACCAACCCCTTCGACTTCATG 692760 Query 133889 GAGAGCATTAGCATTGAATCAAAGACTAATTTCTTCGAGGCGAGGGTAGCCGAATAC 133945 |||| ||| | ||| ||||| || ||||||||| | | || ||||| ||| Sbjct 692759 GAGAACATCTCCCTTGGTGGCAAGACCAACTTCTTCGAGAAGCGTGTTGCCGACTAC 692703 >seq1846 Length=226245 Score = 107 bits (118), Expect = 6e-18 Identities = 391/600 (65%), Gaps = 38/600 (6%) Strand=Plus/Plus Query 251407 ATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGA 251466 || || ||||| | | || || ||||| | | ||||||| || | ||| | || || Sbjct 71982 ATGAGTCCACAAATCTCGCAGACGTGGACACGGAAAGCATCCGACACCTCAAACAGACGC 72041 Query 251467 CCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAA 251526 |||| ||| || |||||||| | |||||||||||||| |||||||| ||||| Sbjct 72042 TCCTTCAGGAAAGCAGCGGCACCGTGAGCGATCATACAATCACGTTCCATTTCTCCGAAT 72101 Query 251527 CGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGA-GAT-TAACCATAG 251584 || ||||||||||| ||||| | ||||||| |||| || || || | ||| | | | | Sbjct 72102 CGGAGACCACCATCACGAGCACGACCCTCGACAGGTTGTCGGGTCATGATCTGA--ACTG 72159 Query 251585 GACC----GATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAG 251640 |||| | ||||| || ||| || | ||||| || |||||||||||| Sbjct 72160 GACCACGAGCACGAGCG----TGAATCTTGTCGTCCACCATGTGACGAAGACGCTGGTAG 72215 Query 251641 AATGCGGGACCGATGAAGA----TGCTCGAAGGCATTTGCTCTCCAGTTAGAGCGTTATA 251696 | | || |||| ||| | || || | || || | |||||| || |||| || Sbjct 72216 TAGGTAGGTCCGAAGAACACCTGAGCACGGA-GCTTTCG---TCCAGTGTGACCGTTGTA 72271 Query 251697 CATAACTTCGTTTCCATTAGATTCATAACCAAGTTTCTGTAGCTCTGAAGCAATATCAC- 251755 ||| || ||| || ||||| ||||| | ||| ||| |||| | || Sbjct 72272 CATGACCTCGAAACCTCGAGATTGGTAACCGTGCTTC-----CTCAGAAGTTCTGAGACT 72326 Query 251756 CAATCTTGAATTTGCTAAAACTG------GTGCCGTCTCCGTAAAGACCCATTTGAATCA 251809 |||| || | || | | || ||| |||| || | | ||| | | Sbjct 72327 GAATC--GACTGTGACATCAGTGAACGGTGTGGCGTCACCCTCCATACCTTCCAGCGTTG 72384 Query 251810 ACACTTTGCCTAAAAGTGTCTCTTTCAGTTGGGCGATAGTCATACGACTGGGAATAGCAT 251869 | || |||| | ||| ||| ||| ||||| || ||||| || ||||| || | Sbjct 72385 AAACCTTGCTAAGAAGACACTCAATCAAATGGGCAATTGTCATTCGCGATGGAATGGCGT 72444 Query 251870 GGGGATTGATGATGATGTCGGGTTTCAGTCCATCAGCAGTGAAGGGCATATCCTTTTCCT 251929 | || ||||| ||||| ||||| | || || || |||| |||||||||| | | Sbjct 72445 GAGGGTTGATAATGATATCGGGAGTAAGACCTTCTCGGCTGAAAGGCATATCCTCCT-GT 72503 Query 251930 CAATAATGT--TTCCAATAGTTCCCTTTTGTCCGTGACGAGAACTGAACTTATCACCAAT 251987 | || |||| || || || |||||||| |||||||||||| ||||| |||||||| Sbjct 72504 CGAT-ATGTAACACCGATTGTACCCTTTTGACCGTGACGAGAAGCAAACTTGTCACCAAT 72562 >seq1001 Length=1910615 Score = 95.1 bits (104), Expect = 4e-14 Identities = 184/272 (68%), Gaps = 0/272 (0%) Strand=Plus/Minus Query 302572 TCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCT 302631 ||||||| | ||| | || || ||||| |||||||| ||| | || || || || Sbjct 840041 TCTTCCAGAGCCTTAACCAATCGTCGCTGGATATAACCTGTTTCGGCAGTCTTGACTGCA 839982 Query 302632 GTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGC 302691 |||||||| ||||| | |||||| |||| || |||||||| | || || || Sbjct 839981 GTATCAATGAGACCTTCTCGACCAGCCATGGCGTGGAAGAAAAATTCGCTAGGAGTGAGA 839922 Query 302692 CCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTA 302751 || | | | ||| |||| ||||| ||||| ||||| || || | ||| ||||||| Sbjct 839921 CCACGGAGGTAAGAGTTCTCGACGAAGCCACGGGCCTCAGGTGAGTAATCGTCCTTGGTA 839862 Query 302752 AAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGC 302811 ||||| || | || | | || | || | || |||||||| || || || | ||| Sbjct 839861 AAGTGAGGTAATGTGCGATACTTGAAACCAAAAGGAATACGCTTGCCTTCGACAATTTGC 839802 Query 302812 TGTCCCAGGCACGAAATCATCTGCGAAATATT 302843 || || | || | |||| || |||||||| Sbjct 839801 TGACCGACAAGCGCAGTCATTTGAGAAATATT 839770 Score = 93.3 bits (102), Expect = 1e-13 Identities = 105/140 (75%), Gaps = 3/140 (2%) Strand=Plus/Minus Query 301813 AGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCA 301872 |||||||| | | ||| || |||||| | || ||||| |||||||| |||||||| Sbjct 840818 AGAATTTCCTTGAGACGTGGCACACCAAGAGTAACGTT---CTTGGACGACACACCAGCG 840762 Query 301873 AAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATC 301932 || ||||| || ||||| || | ||||||| |||||||||||| || || || | Sbjct 840761 AAATGGAAGGTGTTCAGTGTCATCTGAGTAGCAGGCTCACCAATAGACTGCGCAGCCAGA 840702 Query 301933 ATACCAACCATTTCTCCTGG 301952 | |||||||||||| || || Sbjct 840701 ACACCAACCATTTCACCAGG 840682 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471749071252658