Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702555 .1_202016-08-10] 3,634 sequences; 56,857,404 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq2380 205 1e-47 seq3193 194 2e-44 seq1602 84.2 3e-11 >seq2380 Length=1938854 Score = 205 bits (226), Expect = 1e-47 Identities = 1167/1842 (63%), Gaps = 43/1842 (2%) Strand=Plus/Plus Query 117805 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 117864 |||||||||| || || |||| || || ||||||||||| || |||||||| | Sbjct 1153076 TGAACTGAATAGGAGCAGCAGCAGCCTGTGTACGAAGGTAGTACATGCCAGTCTTGAGGC 1153135 Query 117865 CCTGCTTCCAGGCATACATA-TGCATTGAGGACAACTTGGAGAGGGTTGGACTTTCCATG 117923 | |||||||| | | || | ||||| || | |||| | || || || |||| Sbjct 1153136 CAAGCTTCCAGCC-TGCAAAGTGCATACTGGTGATCTTGCCCATCGTGGGGTCTTTCATG 1153194 Query 117924 AAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATC 117983 || ||||| ||||| ||||| |||||| || ||||| || ||||| | || Sbjct 1153195 TGGATGTTCAGTGACTGGGACTGATCAATGAAGGCACCTCGATCAGCAGCCATCTGAACG 1153254 Query 117984 ACATCCTTCATCTTGATTTCCCACACAGTCCTGTAGAGGTTCTTAATATCATCTGGGATA 118043 || | | ||| ||||| || ||| | || || ||| | ||| | ||||| Sbjct 1153255 ACTTGGCGCTGAGAGATCTCCCAAACGGTCTTATACAGAGCCTTGACATCGGCAGGGATG 1153314 Query 118044 TCCACGATATTTTGGATGGATCCACCCGCCTTGACCATGAGATCCTTCATATCCTTTGAC 118103 | || || || ||||| ||| | | | ||| | | ||||||| | | ||| Sbjct 1153315 TTGGGAATGTTCTGAATGGAACCATTCTCAGCAATGATGCGGTTCTTCATAGCATCGGAC 1153374 Query 118104 CAGAGACCAATCTTTTTGAGATCCTCCACGAGATGCTTATTGACAACAACAAACTCACCC 118163 || ||||| || | || |||| | || |||||||| |||||||| Sbjct 1153375 CACAGACCCATGTCGACAAGGTCCTTGAGCAGCCAGGGGTTGACAACCTGGAACTCACCA 1153434 Query 118164 GCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCC 118223 ||||| |||| | ||||| |||| ||||| ||||| |||||||| ||||| ||| Sbjct 1153435 GCGAGAACACGTCGTTGGTAGATGTTGGAGGTGTAGGGCTCGAAGCACTCGTTGTTGCCC 1153494 Query 118224 AAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCC 118283 | || |||| || ||| || ||||| || || | ||| || |||||||||| || Sbjct 1153495 AGAATCTGGGAGGTACTGGCAGTAGGCATAGGAGCAAGGAGCAGACTGTTACGGATGCCG 1153554 Query 118284 TTTTCCCTAATGCGTTC-CTTGA-GAGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCT 118341 | | | | | | | | || || ||| |||||||| || | | || | | Sbjct 1153555 TGTGTCTTGA--CTTCCTCTCGAAGAGTCTCCCAGTCCCAGAGGTCAGAGGGCTTGACGT 1153612 Query 118342 GCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATG 118401 |||||| || |||||||||||||| | || || || || || | || || || | Sbjct 1153613 TCCACATGTCGAACTGGAGGATACCCTCAGAGGCGGGGGAACCTTTGAAGGTGGAGTAGG 1153672 Query 118402 GGCCCTCAACCTCCGCCAATT---CGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTT 118458 | ||||| ||| |||| | ||||| || |||||| ||||| || || || | Sbjct 1153673 GACCCTCCTCCTTAGCCAGCTGCACGGAG---GCAGTGAGGGCAGCGTGGTAAATGGTCT 1153729 Query 118459 CAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAA-A 118517 | || || | || | | |||||| || || || | | || || | | Sbjct 1153730 CGAAGATCTGCTTGTTGAGCTCACGAGCCTCGGGTGACTCGAAGGGCATGCG-CAGAGCA 1153788 Query 118518 ATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGAC 118577 | || |||| || || || || ||||| || ||||| || || || | ||| ||| Sbjct 1153789 AGGAAAGCATCGGCAAGGCCCTGAACACCAAGACCAATGGGTCGGTGGCGCATGTTACTG 1153848 Query 118578 TTCCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTG 118637 || ||||| || || || || ||| |||||| | | | || || || | Sbjct 1153849 TTGCGAGCCTCCTGGACAGGGTAGTGGTTCACATCGATGATCTTGTTCAGGTTGCGAATA 1153908 Query 118638 ACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCAT---TG 118694 ||||||| ||| | || | ||| | | | || | || || ||| || | || Sbjct 1153909 ACAACCTGACTGACCTTGTGCAACTTCTTGAAGTCGTA---GCAAGCCTCATCGTAGTTG 1153965 Query 118695 ACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTG 118754 | | || || || | || || || || || |||| | ||| || || | Sbjct 1153966 ATGAAAGAGGGCAGAGCCAGAGAGGCAAGGTTGCAGACAGCGACCTCGTCAGGGGCACAG 1154025 Query 118755 TACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTT 118814 ||||| |||||||| ||||||| ||| || || ||||| || | ||||||||| || Sbjct 1154026 TACTCAATAATTTCAGTGCACAGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTTG 1154085 Query 118815 GACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGAC 118874 ||| ||| || ||||||||||| |||||| |||| | || ||||| || |||| | Sbjct 1154086 CTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCC 1154145 Query 118875 TTGAGAATAGCCTTCCAGACATCGGCAGC--TGGCACAGTGGCGTTGGCTCGCCCCTCTT 118932 | ||||| || | ||| | | ||| || | | ||| || | ||||| | Sbjct 1154146 TCAAGAATGGCGTACCAAAGTTTCTGAGCCTTGATAGTCTTGCG-ACCCTTG-CCCTCCT 1154203 Query 118933 CCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTG 118992 |||||||||| ||| || || || ||||| || || | || | ||| || || Sbjct 1154204 TCTCGTACTTTTCGTACAGAGCCTCGAACTCCTCTCCGTAGCAGTCGGCGAGGCCAGGGC 1154263 Query 118993 CCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGT 119052 || | ||||| | || | ||| | || || ||||| ||||||||||| || | Sbjct 1154264 ACTCGTTGGGGCACATCAGCGTCCAGTCGCCGTTCTTTTCAACACGCTTCATGAAAAGAT 1154323 Query 119053 CTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGA 119112 | |||||||| || || ||| || || || || | || || | || || || Sbjct 1154324 CAGGGATCCAAAGGGCGAGGAAAAGGTCACGGGCACGGACCTCCTCTTTACCGTGGTTCT 1154383 Query 119113 GACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTG 119172 ||| | || | || || | || ||| | |||||| || || ||||| | || | | Sbjct 1154384 TACGGAGATCAAGGAACTCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAG 1154443 Query 119173 -AC-----CCCTTACGACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACAC 119226 || | ||| | | ||| |||||| ||||| | |||||| ||| || |||| Sbjct 1154444 CACCGGGTCGCTT--GTTG-CCACCCTGGTCGACATAGCGAGCAGTGTTGTTGAAGACAC 1154500 Query 119227 GAAGCATTGGAATGATACCATCGGATTGGCCATTTGT-CCCCCGA-ATACGAGACTTATT 119284 ||||||| |||| | ||| | ||| || || || || ||| ||| ||| | | | Sbjct 1154501 GAAGCATAGGAACAACACCGTTCGATGTACCGTTGGTACCGGCGATATAGGAGCC--AGT 1154558 Query 119285 GGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCA 119344 || | || | ||| | || || ||||||||| || ||| ||| ||||| || || Sbjct 1154559 AGCACGGATACGGTGCACGTTCAGACCAATACCACCAGCCATCTTGGAGATCATGGCACA 1154618 Query 119345 CTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCA 119404 | ||||| | ||||||| || || || ||| |||| | | | | |||||| Sbjct 1154619 GGTCTTGAGAGTATCGTAGATTCCCTCAATACTGTCGTCCTTCATATCAACCAAGAAGCA 1154678 Query 119405 GCTCGACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAA 119464 |||| ||| ||| || || || ||||||||||| || || | || || |||| Sbjct 1154679 AGATGACAATTGGGGCTGAGGGGTGCCGGCGTTGAAGAGCGTGGGAGAGGCATGTGTGAA 1154738 Query 119465 CA--TACCTTGGGACATCTTGTCGTAGGTCTCCAAGAC-GGCGGGAATGTCTTCCCCGTG 119521 | | || ||||||| || ||| ||||||||||| || | || || || || Sbjct 1154739 GAATTTGCT--GGACATCAGGTTGTATGTCTCCAAGACTCGCTCG-ATATCATCACCCCA 1154795 Query 119522 AATACCGATCGAGACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAG 119581 |||||| | || || ||||| | ||||| || || || | | |||| || | Sbjct 1154796 AATACCAACAGACACACGCATGATCATGTGCTGAGGGCGCTCGACAATCTTACCGTCAAT 1154855 Query 119582 CCTCTGGAGGTAACTCTTCTCCAAGGTCTTGAGACCAAAATA 119623 | | ||||||| |||||| ||||||| ||||| || Sbjct 1154856 CTTGAGGAGGTATGATCGCTCCAAAGTCTTGAAGCCAAAGTA 1154897 >seq3193 Length=700513 Score = 194 bits (214), Expect = 2e-44 Identities = 537/812 (66%), Gaps = 15/812 (2%) Strand=Plus/Plus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 ||||| |||| ||||||||||||||||| ||||| || | | | ||| |||||||| Sbjct 692704 TAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTCTCCATG 692763 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAAT-TGCTGGCACTCCAATCTGTTTGAGGAGACG 129846 || || || ||||| | | || ||| | || | |||| | |||||||| Sbjct 692764 AAGTCGAAGGGGTTGGTGGCCTTGTAAACCTTCTCGTTG-CCAAGCGCGACAAGGAGACG 692822 Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACA 129906 ||| | |||| |||||||||||| ||| || |||||||| |||| ||| ||| Sbjct 692823 ATCAGCGACGAACTCAATGTACTGCTTCATGAGGTCAGAGTTCATGCCGAGAAGGGCACA 692882 Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966 || || || || || |||| ||| |||||| || || || | ||| | || Sbjct 692883 GGGAAGAGCCTCAGTGAGGAACTCCTGCTCAATCGTGACGGCATCAGTAATGATATCCTG 692942 Query 129967 AATGGTCTCCGTGC---CAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCACGGCAAACTC 130023 || ||| | ||| || | | ||| | || | || ||| || |||||| || Sbjct 692943 GATCATCTGCTTGCTGGCACGACCCTTGAGGTGAGAGTGGAGGAGG--CA-GGCAAAGTC 692999 Query 130024 CTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAG 130083 ||| |||||||| ||||| |||||||| || || |||||| |||||| |||||||| Sbjct 693000 AGTGTGAAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCGGGCATGAG 693059 Query 130084 ACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 130143 ||| |||||||| | |||||| || | || | ||| ||||||||| ||||| || Sbjct 693060 ACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGCACCACTGAAGAAGATACCCTCAAC 693119 Query 130144 ACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCACTTCAT 130203 | ||||| |||| |||||||| ||||||||| | ||| | | ||| || Sbjct 693120 AGCAGCGAAAGCAACGAGACGCTGGGCAAAGGAGGAGTCCTTATCCTGGATCCATCGGAT 693179 Query 130204 CGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTT 130263 ||||| | ||||| || ||| || |||| ||||| || || | |||||| | | Sbjct 693180 GGCCCAGTCGGCCTTCTTTCGGATGCAGGGGATGGTCTCAATGGCGTTAAAGAGGTAGGT 693239 Query 130264 CTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCATGGAC 130323 | | || || |||||||| | || ||||| || || || ||| |||| Sbjct 693240 TCGCTGGGCGGGCTCCTTGATGTAGGTGTCAATGAGCAGGGAGTAGGTCTCGGAGTGGAT 693299 Query 130324 CAT-TTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTCAT 130382 | | ||| || | ||| | ||||||| | || || ||| ||||| ||||| Sbjct 693300 GTTCTCCATCAT-GATCTGGAAGCCGTAGAAGCAACGAGCCTCGGGGATCTGGACCTC-G 693357 Query 130383 CTGCAAAATTG-TTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAACGCC 130441 | | ||| | | || ||||| ||||| ||||| || |||| ||||| || Sbjct 693358 CCACTGAATCGCTCGACGAGGTTCTCGTTGACAATACCATCAGAGGCAGCGAAAAAAGCA 693417 Query 130442 AGGATATACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTTCCAGTCGTCAAGA 130498 ||||| | | ||| ||| |||| | ||| || | |||||||| | ||| Sbjct 693418 AGGATGTGAGAGACGAAGAACTGCTCATCGGCAGTCAGGCGGTTGTTCCAGTCATGGAGA 693477 Query 130499 TCCTTCGAGAGATCTACCTCCTCCGCAGTCCA 130530 ||||| || ||||| | |||||| |||||||| Sbjct 693478 TCCTTGGAAAGATCAATCTCCTCAGCAGTCCA 693509 >seq1602 Length=525257 Score = 84.2 bits (92), Expect = 3e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 180879 CAACTTGGCACCGTAGCCATTGCGTCCACCAACAATTCTCTTCTTGTTGTCATCGTAGTT 180938 || |||||||||||| || ||||| |||||||| || |||||| || ||| ||| |||| Sbjct 295361 CAGCTTGGCACCGTAACCGTTGCGACCACCAACGGTTTTCTTCTCGTCGTCGTCGAAGTT 295420 Query 180939 TGTACTCGTGAGGAGGTGACCAAAGGTAAGTTCTGGATTCCAAATATCCTCCTTTTCGTG 180998 | || || | || || || ||| |||| || ||| | | || | |||||||||||| Sbjct 295421 GGAACCCGCCAACAGATGTCCGAAGATAAGCTCAGGAATGTAGATCTTCTCCTTTTCGTG 295480 Query 180999 CATA 181002 ||| Sbjct 295481 AATA 295484 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618407107581040