Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702555
.1_202016-08-10] 3,634 sequences; 56,857,404 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq2380 228 9e-55
>seq2380
Length=1938854
Score = 228 bits (252), Expect = 9e-55
Identities = 521/775 (67%), Gaps = 22/775 (3%)
Strand=Plus/Minus
Query 53180 CCTCAGTATCTTTTCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTC 53239
|||||| | | ||||||| || | | ||||| ||||| || | ||| |||
Sbjct 1154831 CCTCAGCACATGATCATGCGTGTGTCTGTTGGTATTTGGGGTGATGATATCGAGCGAGTC 1154772
Query 53240 CGTGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTC 53299
||||| ||| || | ||| | || | ||| || || ||| | || || || |||
Sbjct 1154771 TTGGAGACATACAACCTGATGTCCAGCAAATTCTTCACACATGCCTCTCCCACGCTCTTC 1154712
Query 53300 AACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGAC 53359
||||| || || ||| || || |||| |||||| |||| | |||||||| |||
Sbjct 1154711 AACGCCGGCACCCCTCAGCCCCAATTGTCATCTTGCTTCTTGGTTGATATGAAGGACGAC 1154652
Query 53360 TCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGT 53419
|| || || |||||||| || |||||| |||||| ||||||||| | | |||
Sbjct 1154651 AGTATTGAGGGAATCTACGATACTCTCAAGACCTGTGCCATGATCTCCAAGATGGCTGGT 1154592
Query 53420 GGTATCGGTATCCAC-TGCTC-GAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGA 53477
||||| ||| | || ||| | | | ||||||| | ||| | ||| || || |
Sbjct 1154591 GGTATTGGTCTGAACGTGCACCGTA--TCCGTGCTACTGGCTCCTATATCGCCGGTACCA 1154534
Query 53478 ACGG--CGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTA 53535
|||| | ||| | || | || |||||||| || |||||||||||||| || || ||
Sbjct 1154533 ACGGTACATCGA--ACGGTGTTGTTCCTATGCTTCGTGTCTTCAACAACACTGCTCGCTA 1154476
Query 53536 CGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCA 53595
||| |||||||||| ||||| || | || ||||||||||||||||| |||||
Sbjct 1154475 TGTCGACCAGGGTGGCAACAAGCGACCCGGTGCTTTTGCCATCTACCTCGAGCCTTGGCA 1154416
Query 53596 CGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTG 53655
| | || | | ||||| || || || ||| ||| || ||| | || ||| | ||
Sbjct 1154415 CTCTGATGTCTTCGAGTTCCTTGATCTCCGTAAGAACCACGGTAAAGAGGAGGTCCGTGC 1154356
Query 53656 CCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGA 53715
||||||||| || || || ||||| || || || |||||| | || || ||| |
Sbjct 1154355 CCGTGACCTTTTCCTCGCCCTTTGGATCCCTGATCTTTTCATGAAGCGTGTTGAAAAGAA 1154296
Query 53716 CGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTC-CAGGGTGTCTACGGTG 53774
|| || ||| ||||||||||| ||||||||||| |||||| | | || |||||| |
Sbjct 1154295 CGGCGACTGGACGCTGATGTGCCCCAACGAGTGCCCTGGCCTCGCCGACTG-CTACGGAG 1154237
Query 53775 AGGAGTTTAACGAGATGTATCGGACGTAC-----GCAGTTC-AGGGCCGCTACAAGAAGA 53828
||||||| | | |||| | |||| | || | |||| ||| ||||
Sbjct 1154236 AGGAGTTCGAGGCTCTGTACGAAAAGTACGAGAAGGAGGGCAAGGGTCGC------AAGA 1154183
Query 53829 AGGTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGC 53888
||||||| | | | ||| | || || || || |||| ||||| |||| |
Sbjct 1154182 CTATCAAGGCTCAGAAACTTTGGTACGCCATTCTTGAGGCCCAGACTGAGACCGGAAACC 1154123
Query 53889 CGTACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGG 53943
| | |||| |||||||||| | |||| ||||||||||| |||||| ||||
Sbjct 1154122 CATTCATGCTCTACAAGGATGCCTGCAACCGCAAGAGCAACCAAAAGAACCTCGG 1154068
Score = 89.7 bits (98), Expect = 6e-13
Identities = 530/830 (64%), Gaps = 54/830 (7%)
Strand=Plus/Minus
Query 55127 GTTGTGACTCGGAACCTGAACCGGGTCATCGACAAGAATTACTACCCGACTGAAGCGGCG 55186
||||| | ||| ||||||||| | ||||||| ||| ||||||| | | |||
Sbjct 1153913 GTTGTTATTCGCAACCTGAACAAGATCATCGATGTGAACCACTACCCTGTCCAGGAGGCT 1153854
Query 55187 CGCAAGTCCAACCTCCGGCACCGGCCCATCGCCATCGGTGTACAGGGCTTGGCCGACATC 55246
||||| ||| | || ||||| ||||| | | ||||| |||||| | |||||
Sbjct 1153853 CGCAACAGTAACATGCGCCACCGACCCATTGGTCTTGGTGTTCAGGGCCTTGCCGATGCT 1153794
Query 55247 TTCATGATGCTCGGAT--TGCCCTTCGACTCGGAACCT--GCTCGAGAAATTAACCAGGA 55302
||| | ||||| | |||||||||| || | || ||||| || | ||| || |
Sbjct 1153793 TTCCT--TGCTCTGCGCATGCCCTTCGAGTC--ACCCGAGGCTCGTGAGCTCAACAAGCA 1153738
Query 55303 CATCTTC-AGTCGCATCTACTTTGCAGCGCTCGAGGAGTC-GTGTCATCTGGCTATGAGC 55360
|||||| || | ||| ||| || || ||| | || ||| || ||||||| |
Sbjct 1153737 GATCTTCGAGAC-CATTTACCACGCTGCCCTCACTGCCTCCGTG-CAGCTGGCTAAGGAG 1153680
Query 55361 GAGGGGACCTACGAGACGTTCCGTGATTCGCCAGCTGACAAGGGACTTCTCCAGTTCGAT 55420
||||| ||||| || ||| | ||| || || |||| | |||||||||||
Sbjct 1153679 GAGGGTCCCTACTCCACCTTCAAAGGTTCCCCCGCCTCTGAGGGTATCCTCCAGTTCGAC 1153620
Query 55421 CTATGG---GGCAAG---TCTGACCCCATG---TTTGACA-------AGTTGAAG-CATG 55463
| ||| | |||| ||||||| | | | || | || |||| || |
Sbjct 1153619 ATGTGGAACGTCAAGCCCTCTGACCTCTGGGACTGGGAGACTCTTCGAGAGGAAGTCAAG 1153560
Query 55464 ACATTCACTTGTGGGGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGA 55523
||| ||| ||| | || ||| |||||| | || || ||||| || || |
Sbjct 1153559 ACA--CAC------GGCATCCGTAACAGTCTGCTCCTTGCTCCTATGCCTACTGCCAGTA 1153508
Query 55524 CGGCTCAGATCATGGGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGC 55583
| | ||||| |||||||||||||| |||||||| ||||| |||||||||||| |
Sbjct 1153507 CCTCCCAGATTCTGGGCAACAACGAGTGCTTCGAGCCCTACACCTCCAACATCTACCAAC 1153448
Query 55584 GCCGGACCCTAGCAGGTGAGTTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGA 55643
| || || || |||||||| | ||||| || ||||||||||
Sbjct 1153447 GACGTGTTCTCGCTGGTGAGTTCCAGGTTGTCAACCCCTGGCTGCTCAAGGACCTTGTCG 1153388
Query 55644 AGATCAACAAGTGGAACCCGCAG--ATCAAGA--CGGAT-ATTGTGCGGAACGGGGGGTC 55698
| || |||| ||| | || |||| || || |||| ||| || ||
Sbjct 1153387 ACATGGGTCTGTGGT--CCGATGCTATGAAGAACCGCATCATTGCTGAGAATGGT---TC 1153333
Query 55699 CGTCCAGAA---TCTGGAGATTCCTCTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGA 55755
| | ||||| || | || ||| | |||||| | || ||| || |||||
Sbjct 1153332 CATTCAGAACATTCCCAACATCCCTGCCGATGTCAAGGCTCTGTATAAGACCGTTTGGGA 1153273
Query 55756 GATTCCACAGAAG--AGTCTGATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAG 55813
||| | ||| |||| || | ||| ||||||||| ||||| | ||| || |||
Sbjct 1153272 GATCTCTCAGCGCCAAGTCG--TTCAGATGGCTGCTGATCGAGGTGCCTTCATTGATCAG 1153215
Query 55814 TCCCAGTCTCTGAACATCTTCATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCAC 55873
|||||||| ||||||||| |||| | | || | ||| |||| | | | ||||||
Sbjct 1153214 TCCCAGTCACTGAACATCCACATGAAAGACCCCACGATGGGCAAGATCACCAGTATGCAC 1153155
Query 55874 TTTTACGGGTGGAAGAAGGGACTCAAGACGGGTATGTACTATCTGCGGAC 55923
||| || |||||| || |||||||| || |||||||| || || ||
Sbjct 1153154 TTTGCAGGCTGGAAGCTTGGCCTCAAGACTGGCATGTACTACCTTCGTAC 1153105
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547191142713200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |