Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702555 .1_202016-08-10] 3,634 sequences; 56,857,404 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq3314 143 2e-29 seq3215 143 2e-29 seq3413 129 5e-25 >seq3314 Length=1526608 Score = 143 bits (158), Expect = 2e-29 Identities = 186/251 (74%), Gaps = 7/251 (3%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | || || || || ||| ||||||||||||||| || || ||| Sbjct 659450 CCACCACGGAGGCGGAGAACAAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGAG 659509 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| |||| || ||||||||||||||||| |||| ||| || ||||| | |||| Sbjct 659510 AGAGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAAAATCAAGCGTTGCTGGTCGGGGGGA 659569 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTT--CAACGACGACACAGTGTCGCTCGACTCC 41812 | || |||||||||| ||| | || | ||| || | || | ||||||| ||||| Sbjct 659570 ATGCCCTCCTTGTCC-TGAATCTTGGACTTGACATTGTCG--ATAGTGTCGGAAGACTCA 659626 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTTATCGATG 41872 ||||| | || || || || || |||| ||||| ||||| ||||||||| | || | Sbjct 659627 ACCTCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCATGATGGCGGT- 659685 Query 41873 GATCTCGCGCG 41883 ||||| |||| Sbjct 659686 GATCTGTCGCG 659696 Score = 118 bits (130), Expect = 1e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| || || | || || || || || ||||||||| ||||| |||||| Sbjct 658711 GCCACCGCGAAGTCGGAGAACGAGGTGAAGAGTTGACTCCTTCTGGATGTTGTAGTCGCT 658770 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 | |||||| | || || | |||||| || ||||| || || |||||||| || | ||| Sbjct 658771 CAAGGTGCGACCATCTTCCAACTGCTTACCAGCGAAGATAAGACGCTGTTGATCAGGGGG 658830 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 || | |||||||||| || || ||||| || | | | |||||| || ||||| | Sbjct 658831 AATACCCTCCTTGTCCTGAATCTTGCTCTTCA-CGTTGTCGATAGTGTCACTGGACTCGA 658889 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| | || || || || || || || ||||| || ||||||||||| Sbjct 658890 CCTCAAGGGTGATGGTCTTTCCGGTGAGAGTCTTCACAAAAATCTGCAT 658938 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| || || || |||||||||||||| |||||||| Sbjct 658940 CCACCACGAAGACGGAGAACCAAGTGGAGAGTAGATTCCTTCTGAATGTTGTAGTCGGAA 658999 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || | || || || |||||||| ||||| || || |||||||| || | ||| Sbjct 659000 AGAGTTCGGCCATCTTCAAGTTGCTTGCCAGCGAAGATGAGTCGCTGTTGATCGGGAGGA 659059 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCA-ACGACGACACAGTGTCGCTCGACTCCAC 41814 | | |||||||||| ||| || ||||| | | | | || ||| ||||| || Sbjct 659060 ATACCCTCCTTGTCCTGGATCTTGCTCTTCACATTATCA-ATGGTATCGGATGACTCGAC 659118 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| || || || || || || || ||||| ||||| || ||||| Sbjct 659119 TTCCAGAGTAATGGTCTTTCCAGTGAGGGTCTTGACGAAGATTTGCAT 659166 Score = 102 bits (112), Expect = 8e-17 Identities = 155/218 (71%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | || ||||| || || |||||||||||||| ||||||| Sbjct 659168 CCACCACGGAGGCGGAGGACGAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCGGCA 659227 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || | || ||||| ||||| || || || ||||| ||||| ||||| | || Sbjct 659228 AGGGTTCGGCCATCTTCGAGTTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGG 659287 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||||||| ||| | |||| | ||| | | | || ||| |||||| || Sbjct 659288 ATGCCCTCCTTGTCC-TGAATCTTTGACTTAACATTGTCGATGGTATCGGACGACTCGAC 659346 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGA 41852 ||| | || || || || || || || ||||| |||| Sbjct 659347 CTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACGA 659384 >seq3215 Length=308419 Score = 143 bits (158), Expect = 2e-29 Identities = 172/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | ||||| || || ||| ||||||||| ||||| |||||| Sbjct 31166 CCACCACGGAGGCGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTC 31107 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || |||||||||||||| || || || || ||||| ||||| | ||| Sbjct 31106 AGGGTGCGTCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGG 31047 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||||||| ||| || ||| ||| | | | |||||| |||||||| Sbjct 31046 ATGCCCTCCTTGTCCTGGATCTTGGACTT-GACGTTGTCGATGGTGTCGGAAGACTCCAC 30988 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 ||| | || ||||| || ||||| || ||||| |||||||||||||| || Sbjct 30987 CTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTT 30937 >seq3413 Length=699090 Score = 129 bits (142), Expect = 5e-25 Identities = 140/184 (76%), Gaps = 4/184 (2%) Strand=Plus/Plus Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732 ||||||| ||||| ||||||||||| || || | || ||||||||||| || ||||| | Sbjct 500170 CCTTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCGAGCTGCTTACCAGCGAAGA 500229 Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGA 41790 |||| ||||||||||||| ||||| || |||||||||| ||| || ||| || | Sbjct 500230 TCAGTCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 500289 Query 41791 CGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850 || | ||||| ||||| ||||| | || || || || |||||||| ||||| || Sbjct 500290 CG--ATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCAC 500347 Query 41851 GAAA 41854 |||| Sbjct 500348 GAAA 500351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462282999840800