Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702575 .1_202016-08-10] 1,743 sequences; 51,983,016 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq14 109 1e-18 >seq14 Length=757373 Score = 109 bits (120), Expect = 1e-18 Identities = 614/963 (64%), Gaps = 34/963 (4%) Strand=Plus/Plus Query 248783 TGGACGGCGCGATTGACTACGGCAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACGC 248842 ||||| || |||| ||| | | ||||| | ||| | | ||||| ||||| || Sbjct 526117 TGGACTCTGCCATTGTCTATGACCGCGATTTCCAATACCAATACTTTGGCTTCAAGACTT 526176 Query 248843 TGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATTCAGCACATGT 248902 ||||| ||| || |||||||| ||||| || ||||| || || || |||||||||| Sbjct 526177 TGGAGCGATCATACCTCCTCAAGATTGACGGTAAGATTGTCGAGCGCCCTCAGCACATGA 526236 Query 248903 TGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAGCGTGCTCGAGACGTACA 248962 | ||||| ||| |||| || ||| ||||| || ||| | || | ||||| |||| Sbjct 526237 TCATGCGTGTGTCTGTTGGTATTTGGGGTGATGATATCGAGCGAGTCTTGGAGACATACA 526296 Query 248963 CCGGAATG---AGTGAACGCTGGATGACACATGCCACACCGACGCTCTTCAACGCCGGTA 249019 | ||| || || || | |||||||| | || ||||||||||||||||| | Sbjct 526297 ACCTGATGTCCAGCAAATTCT---TCACACATGCTTCTCCCACGCTCTTCAACGCCGGCA 526353 Query 249020 -CCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGACTCTGTCGAC 249078 || ||| | || || || ||||| | ||| ||| | |||||| | | || Sbjct 526354 CCCCTCAGC-CCCAATTGTCATCTTGCTTCTTGGTTGATATGAAGGACGACAGTATTGAG 526412 Query 249079 GGCATTTATGACACGCTTAAACAGAC---GGCGAAGATTTCTAAATTCGCGGGCGGAATC 249135 || || || || || || | |||| || | ||| || || | || || || || Sbjct 526413 GGAATCTACGATACTCTCA---AGACCTGTGCCATGATCTCCAAGATGGCTGGTGGTATT 526469 Query 249136 GGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTACATCAAAGGTACAAATGGGGTC 249195 ||||| ||| | ||||| || | || || |||||| ||||| || || | Sbjct 526470 GGTCTGAACGTGCACCGTATCCGTGCTACTGGCTCCTACATCGCCGGTACCAA-CGGTAC 526528 Query 249196 AGTG-ATGGTATCGTACCCCTCCTTCGATGCTTTGAGTCCACCGCCAGGTTCATCAACCA 249254 | | | ||| | || || | ||||| ||| | ||| || | | || |||| Sbjct 526529 ATCGAACGGTGTTGTTCCTATGCTTCGTGTCTTCAACAACACTGCTCGCTATGTCGACCA 526588 Query 249255 GGCCGGGCGC---CGAAAGGGGTCGTTCGCCATGTATTTGGAAGTGTGGCACGCCGATAT 249311 || || | ||| || | || ||||| || | || |||||| | ||| | Sbjct 526589 GGGTGGCAACAAGCGACCCGGTGCTTTTGCCATCTACCTCGAGCCTTGGCACTCTGATGT 526648 Query 249312 ATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAACGAGCTCATGAGAGCGCGTGACCT 249371 || |||||||| || | |||||| |||| || ||| | | || |||||||| Sbjct 526649 CTTCGAGTTCCTTGATCTCCGTAAGAACCACGGTAAAGAGGAGGTCCGTGCCCGTGACCT 526708 Query 249372 CTTCTACGGCCTGTGGGTCTCCGACTTGTTCATGCGCCGCGTCAAGGCCGACGGCGATTG 249431 ||| || ||| ||| || | || | |||||| || || | ||||||| || Sbjct 526709 TTTCCTCGCCCTTTGGATCCCTGATCTTTTCATGAAGCGTGTTGAAAAGAACGGCGACTG 526768 Query 249432 GACGCTTCTTTCTCCGTCCGACGCCCCGGACCTCATCGATCTAC-ACGGCGCCGACTTCG 249490 |||||| | | || ||| ||| | |||| ||| || | |||| | || |||| Sbjct 526769 GACGCTGATGTGCCCCAACGAGTGCCCTGGCCTCGCCGA-CTGCTACGGAGAGGAGTTCG 526827 Query 249491 ACCAAGC-CTATAAGAAA--TACGAATCCAACGGCATCG---GCAAGACAATCAAGGCTC 249544 | || || || |||| ||||| | |||| | ||||||| |||||||||| Sbjct 526828 ---AGGCTCTGTACGAAAAGTACGAGAAGGAGGGCAAGGGTCGCAAGACTATCAAGGCTC 526884 Query 249545 GGACCCTTT-TTGCGAAGGTGGTGGAGTCCCAGATAGAGACAGGGGGGCCGTATTAT-TT 249602 || |||| | || | | ||| |||||| ||||| || || | | || | Sbjct 526885 AGAAACTTTGGTACG-CCATTCTTGAGGCCCAGACTGAGACCGGAAACCCAT-TCATGCT 526942 Query 249603 GTTCAAAGACGCGTGCAACGCCAAGAGTAACCAACGGCATCTTGGTACCATCCGCTCGTC 249662 | ||| || || |||||| |||||| |||||| | | || ||||||||||| || Sbjct 526943 CTACAAGGATGCCTGCAACCGCAAGAGCAACCAAAAGAACCTCGGTACCATCCGAAGCTC 527002 Query 249663 AAATCTCTGTGCAGAGGTGATTCAATACTCGTCCAAGGAGGAGATTGCCGTCTGCAACCT 249722 || || || | || | ||| | |||| || || ||| | || ||||||||||| Sbjct 527003 CAACCTGTGCACTGAAATTATTGAGTACTGTGCCCCTGACGAGGTCGCTGTCTGCAACCT 527062 Query 249723 GGC 249725 || Sbjct 527063 TGC 527065 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073742420447424