Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702575 .1_202016-08-10] 1,743 sequences; 51,983,016 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq839 125 8e-24 >seq839 Length=463053 Score = 125 bits (138), Expect = 8e-24 Identities = 320/482 (66%), Gaps = 9/482 (2%) Strand=Plus/Minus Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242 ||| | ||||| || || || ||||| || || || || ||||||||||| ||||| || Sbjct 257933 ACAGCGATAGGGCCAACACCGGGACCACCGCCGCCGTGGGGAATACAGAAGGTCTTGTGG 257874 Query 138243 AAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGACCTACCTGTGCA 138302 | || ||||| || ||||| |||||| ||||| || | ||||| | ||| || Sbjct 257873 AGGTTGAGATGGCAGACATCAGCACCAATGTCACCGGGGCTGCAAAGACCGATCTGGGCG 257814 Query 138303 TTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAACGATCTTACATATC 138362 || | || ||||| || | || || |||| |||| || || || | | ||| | Sbjct 257813 TTCATGTTGGCACCGTCCATGTAGACGAGACCGCCATGCTCGTGGACAAGATCACAGACT 257754 Query 138363 TGTCTGATGTTTGTTTCAAATACACCATGAGTCGATGGATATGTAATCATAATACATGAG 138422 || |||| | | || || ||||| ||| || ||||| |||| ||| ||| | Sbjct 257753 TGCTTGATCTCAGGCTCGAAGACACCGAAAGTAGAGGGATAGGTAACCATGATAGCAGCA 257694 Query 138423 AGTTCAAATGTATTCATGATTGCTTTCTTCTCTAGATCTTTGATGTCTATGTTGCCA--- 138479 || ||| | | | ||| || || ||||| | ||| || | ||| ||| Sbjct 257693 AGCTCATCAGCGTGCTTGACACACTTGGCCTTCAGATCCTCGATATCCAGGTTACCAGTC 257634 Query 138480 TCATCATCACACTTGACACCTACAACTTTCATTCCTGCCATGACTGCACTAGCAGGATTA 138539 | | | |||||||||||| ||||| ||||| || |||||| | ||| |||||| || Sbjct 257633 TTACCGTCACACTTGACAGTAACAACCTTCATACCAGCCATGGCAGCAGAAGCAGGGTTG 257574 Query 138540 GTTCCATGTGCTGACTCTGGTATCAGACATACATTTCTTTTATCATC-TCCTGATCCTTG 138598 || || || || || | || || || || || |||| ||||| | || || ||| | Sbjct 257573 GTACCGTGAGCCGAAACAGGGATAAGGCAGACCTTTCGCTTATCTCCATCACGAGCCTCG 257514 Query 138599 ATGATATGCTTGGAT--TGCTAACAGTCCTGCATACTCACCCTGTGATCCTGCGTTAGGT 138656 || || || | ||| || | || || ||| |||||||||||| || | ||| || Sbjct 257513 -TGGTAAGCCTTGATACAGCGA--AGACCAGCAAACTCACCCTGTGCACCAGAGTTGGGC 257457 Query 138657 TG 138658 || Sbjct 257456 TG 257455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578985785072360