Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702575
.1_202016-08-10] 1,743 sequences; 51,983,016 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq14 179 1e-39
seq1024 154 4e-32
seq1036 93.3 1e-13
seq902 93.3 1e-13
>seq14
Length=757373
Score = 179 bits (198), Expect = 1e-39
Identities = 573/879 (65%), Gaps = 15/879 (2%)
Strand=Plus/Minus
Query 155630 GTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTT 155689
||| || | ||| ||| ||||||||| || || |||||| || | ||||| |||||
Sbjct 527030 GTACTCAATAATTTCAGTGCACAGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTT 526971
Query 155690 AGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGC 155749
|| | ||| || ||||||||||| || ||| ||||| |||| ||||| |||| ||
Sbjct 526970 GCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGC 526911
Query 155750 GTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGA 155809
|| ||||| ||| || | | || || || |||| |||| |||
Sbjct 526910 CTCAAGAATGGCGTACCAAAGTTTCTGAGCCTTGATAGTCTTGCGACCCTTGCCCTCCTT 526851
Query 155810 CTCATA--TTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGG 155867
||| || |||| || | ||| | | | ||||| ||||| || || || ||||||
Sbjct 526850 CTCGTACTTTTCGTACAGAGCCTC--GAACTCCTCTCCGTAGCAGTCGGCGAGGCCAGGG 526793
Query 155868 CACTTATCGGGGCAAAACAGCGACCAAATTTTATTACCGATT--ACACGCTCCATAAATA 155925
|||| | |||||| | ||||| ||| || | || ||||||| ||| || |
Sbjct 526792 CACTCGTTGGGGCACATCAGCGTCCAGTCGCCGTT--CTTTTCAACACGCTTCATGAAAA 526735
Query 155926 CATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGAT 155985
|||| ||||| || ||||||||| | || |||||| | ||||| |
Sbjct 526734 GATCAGGGATCCAAAGGGCGAGGAAAAGGTCACGGGCACGGACCTCCTCTTTACCGTGGT 526675
Query 155986 TCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAA 156045
|||| || || || | ||| || | ||||| || ||||| || || || ||||
Sbjct 526674 TCTTACGGAGATCAAGGAACTCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAA 526615
Query 156046 AACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACAC 156102
|| ||| | |||| |||||||| || ||||| |||||||| || ||||||||||
Sbjct 526614 AAGCACCGGGTCGCTTGTTGCCACCCTGGTCGACATAGCGAGCAGTGTTGTTGAAGACAC 526555
Query 156103 CTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATG 156162
|||||||||| || ||| || || || || ||||| ||| || | || |||| |
Sbjct 526554 GAAGCATAGGAACAACACCGTTCGATGTACCGTTGGTACCGGCGATGTAGGAGCCAGTAG 526495
Query 156163 AGCGAACATTATGAATATGTAGTCCAATACCACCTGACCAT-TTAGAAATTTGAGCGCAT 156221
|| | | || | | || ||||||||||| | |||| || || || || ||
Sbjct 526494 CACGGATACGGTGCACGTTCAGACCAATACCACCAG-CCATCTTGGAGATCATGGCACAG 526436
Query 156222 TCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCAT-TGATAGTAGATAGCA 156280
||| | ||||| | | || || |||||| || || | ||| | | ||| ||||
Sbjct 526435 GTCTTGAGAGTATCGTAGATTCCCTCAATACTGTCGTCCTTCATATCAACCAAGA-AGCA 526377
Query 156281 CGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAA 156340
|| ||||| || | || || || |||||||| || || || | ||||| | ||
Sbjct 526376 AGATGACAATTGGGGCTGAGGGGTGCCGGCGTTGAAGAGCGTGGGAGAAGCATGTGTGAA 526317
Query 156341 ATACTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTGAAT 156400
| || | ||||| | |||||||||| | ||| | || | || |||
Sbjct 526316 GAATTTGCTGGACATCAGGTTGTATGTCTCCAAGACTCGCTCGATATCATCACCCCAAAT 526257
Query 156401 ACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATTCG 156460
|| | ||| || | ||| ||| |||||||| ||||| |||||| || |||||
Sbjct 526256 ACCAACAGACACACGCATGATCATGTGCTGAGGGCGCTCGACAATCTTACCGTCAATCTT 526197
Query 156461 CAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATA 156499
|| ||||||| || |||| ||| || || || || ||
Sbjct 526196 GAGGAGGTATGATCGCTCCAAAGTCTTGAAGCCAAAGTA 526158
>seq1024
Length=868656
Score = 154 bits (170), Expect = 4e-32
Identities = 467/717 (65%), Gaps = 6/717 (1%)
Strand=Plus/Minus
Query 133232 GCGTTTTTTGCTGCGAGTGATGGTATTGTTCTTGAAAATTTAGGAACACGGTTTATGGGA 133291
|| ||||| ||||| |||||||||||| || || | | || || | ||
Sbjct 775860 GCTTTTTTCGCTGCCTCTGATGGTATTGTCAACGAGAACCTCGTCGAGCGATTCAGTGGC 775801
Query 133292 GAAGTTCAACTGGCCGAAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATC 133351
|| || || | |||| || ||| ||| || || | ||||| |||||| || |||
Sbjct 775800 GAGGTCCAGATCCCCGAGGCTCGTTGCTTCTACGGCTTCCAGATCATGATGGAGAACATC 775741
Query 133352 CATTCTATCACATATTCTACTCTAATTGATACTTACATCAAAGATACCGTCCAGAAGCAC 133411
|| || || || || || ||||| || |||||||| || ||| |||| |
Sbjct 775740 CACTCCGAGACCTACTCCCTGCTCATTGACACCTACATCAAGGAGCCCGCCCAGCGAACC 775681
Query 133412 AAACTATTCAACGCCATTAGCGAATTTCCT-TGTATTAAAAAGAAATCTGACTGGGCTAT 133470
| || || ||||||||| | || ||| || || |||||| | |||||||| ||
Sbjct 775680 TACCTCTTTAACGCCATT-GAGACCATCCCCTGCATCCGAAAGAAGGCCGACTGGGCCAT 775622
Query 133471 TAAATGGATCCAGGACAAGCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGT 133530
|||||||||||| ||| | ||||| |||||||||||||| |||| ||
Sbjct 775621 CCGATGGATCCAGGATAAGGACTCCTCATTTGCCCAGCGTCTCGTTGCTTTCGCTGCTGT 775562
Query 133531 AGAGGGCAtttttttCAGTGGTGCGTTCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTAT 133590
||||| || || ||||||||||| ||| |||||| || ||||| || ||||||||| |
Sbjct 775561 TGAGGGTATCTTCTTCAGTGGTGCCTTCGCCTCTATCTTCTGGCTCAAGAAGCGTGGTCT 775502
Query 133591 TCTACCTGGACTGTGTTTTTCTAACGAACTTATTTCAAGGGACGAGGCACTTCACACCGA 133650
| || || ||| || || ||||| || || || | || |||| |||||||| ||
Sbjct 775501 CATGCCCGGTCTGACCTTCTCCAACGAGCTCATCTCTCGTGATGAGGGTCTTCACACTGA 775442
Query 133651 ATTTGCCGTTTTACTTCACTCTAAATTAGAGCGACCACTCAAAAAGAATAAGATTGAAGA 133710
|||||| | || |||||| | | || | | || ||| | | ||| | ||
Sbjct 775441 CTTTGCCTGCCTCCTCCACTCTCACCTCAAGGGTCGTGCCAGCAAGCAGATGATCCAGGA 775382
Query 133711 AATTATTAGAGAAGCGGTTGAAATTGAGGTTGAATTTATCAATAGTGCTCTGCC--GTGC 133768
|| |||| || || || |||||| || || ||| | ||||| || ||||
Sbjct 775381 TATCATTACTGATGCCGTCACGATTGAGCAGGAGTTCCTCACTGAGGCTCTTCCCTGTGC 775322
Query 133769 CGTTTAATTGGTATGAATGATGTGCTGATGCAGCGTTATATTGAATTTGTAGCTGACAGA 133828
| || | || ||||| || || ||| ||| || ||||| || || ||||| |
Sbjct 775321 CCTT--CTCGGCATGAACTCTGACCTCATGAAGCAGTACATTGAGTTCGTCGCTGATCGT 775264
Query 133829 TTGGCCGTTCAGTTAGGTGGGGATAAGATTTACGGTTCCGCCAATCCATTCGACTGGATG 133888
| || | | || || ||| ||||| || |||| || ||||||| |||
Sbjct 775263 CTCCTTGTCGCGCTTGGCAACGAGAAGGTTTACAAGGCCACCAACCCCTTCGACTTCATG 775204
Query 133889 GAGAGCATTAGCATTGAATCAAAGACTAATTTCTTCGAGGCGAGGGTAGCCGAATAC 133945
|||| ||| | ||| ||||| || ||||||||| | | || ||||| |||
Sbjct 775203 GAGAACATCTCCCTTGGTGGCAAGACCAACTTCTTCGAGAAGCGTGTTGCCGACTAC 775147
>seq1036
Length=115451
Score = 93.3 bits (102), Expect = 1e-13
Identities = 105/140 (75%), Gaps = 3/140 (2%)
Strand=Plus/Minus
Query 301813 AGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCA 301872
|||||||| | | ||| || |||||| | || ||||| |||||||| ||||||||
Sbjct 32685 AGAATTTCCTTGAGACGTGGCACACCAAGAGTAACGTT---CTTGGACGACACACCAGCG 32629
Query 301873 AAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATC 301932
|| ||||| || ||||| || | ||||||| |||||||||||| || || || |
Sbjct 32628 AAATGGAAGGTGTTCAGTGTCATCTGAGTAGCAGGCTCACCAATAGACTGCGCAGCCAGA 32569
Query 301933 ATACCAACCATTTCTCCTGG 301952
| |||||||||||| || ||
Sbjct 32568 ACACCAACCATTTCACCAGG 32549
>seq902
Length=607820
Score = 93.3 bits (102), Expect = 1e-13
Identities = 119/164 (73%), Gaps = 0/164 (0%)
Strand=Plus/Minus
Query 251407 ATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGA 251466
|| || ||||| | | || || ||||| | | ||||||| || | ||| | || ||
Sbjct 407417 ATGAGTCCACAAATCTCGCAGACGTGGACACGGAAAGCATCCGACACCTCAAACAGACGC 407358
Query 251467 CCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAA 251526
|||| ||| || ||||| || | |||||||||||||| |||||||| |||||
Sbjct 407357 TCCTTCAGGAAAGCAGCGGCACCATGAGCGATCATACAATCACGTTCCATTTCTCCGAAT 407298
Query 251527 CGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGT 251570
|| ||||||||||| ||||| | |||||| |||| || || ||
Sbjct 407297 CGGAGACCACCATCACGAGCACGACCCTCAACAGGTTGTCGGGT 407254
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471784731093391
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |