Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702575
.1_202016-08-10] 1,743 sequences; 51,983,016 total letters
Query= NC_022646.1
Length=101818
Score E
Sequences producing significant alignments: (Bits) Value
seq1013 125 5e-24
seq391 125 5e-24
seq897 98.7 6e-16
>seq1013
Length=689792
Score = 125 bits (138), Expect = 5e-24
Identities = 155/212 (73%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
||||||||||| | |||| ||||||||| ||||| ||||| ||| |||| ||||
Sbjct 114685 AGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGTCCATCC 114626
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|| || ||||| || || ||||| ||||| |||||||| | || | |||||||||||
Sbjct 114625 TCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 114566
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945
| || || |||||| | || | || | ||| || |||| ||| || |||
Sbjct 114565 TGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTC 114506
Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|| |||||||||||||| || || ||||||||
Sbjct 114505 TTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 114474
>seq391
Length=449679
Score = 125 bits (138), Expect = 5e-24
Identities = 155/212 (73%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
|| || ||||||| || ||||||||||||||| ||||| || | |||| ||||
Sbjct 372829 AGAACGAGGTGAAGAGTTGACTCCTTCTGAATGTTGTAGTCGCTTAAGGTGCGACCATCT 372888
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|||| ||||| || |||||||| || || || || || | || | |||||||||||
Sbjct 372889 TCCAACTGCTTACCAGCGAAGATAAGACGCTGTTGATCAGGGGGAATACCCTCCTTGTCC 372948
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945
| || || || ||| | || | ||| ||| |||||| |||| ||| ||||||
Sbjct 372949 TGAATCTTGCTCTTCACGTTGTCGATAGTGTCACTGGACTCGACCTCAAGGGTGATGGTC 373008
Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
||||| ||||| ||||| ||||| ||||||||
Sbjct 373009 TTTCCGGTGAGAGTCTTCACAAAAATCTGCAT 373040
Score = 114 bits (126), Expect = 8e-21
Identities = 158/219 (72%), Gaps = 8/219 (4%)
Strand=Plus/Plus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
|| || ||||||| ||| ||||||||||||||| || || || || |||| | ||
Sbjct 373567 AGAACAAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGAGAGAGTGCGGCCGTCC 373626
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|| || ||||| |||||||| |||| ||||||||||| | || | |||||||||||
Sbjct 373627 TCAAGCTGCTTGCCGGCGAAAATCAAGCGTTGCTGGTCGGGGGGGATGCCCTCCTTGTCC 373686
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941
| || || ||||| || | ||||| || | ||| || || | ||| ||
Sbjct 373687 TGAATCTTGGACTTGAC--AT--TGTCGATAGTGTCGGAAGACTCAACCTCGAGGGTGAT 373742
Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATGAT 34980
|||||| || || | |||||| || ||||||||||||||
Sbjct 373743 GGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCATGAT 373781
Score = 109 bits (120), Expect = 4e-19
Identities = 148/204 (73%), Gaps = 8/204 (4%)
Strand=Plus/Plus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
||||| || |||| ||| |||||||||||||| ||||| | ||| | || ||||
Sbjct 373285 AGGACGAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCGGCAAGGGTTCGGCCATCT 373344
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|| ||||||||||| || |||||||| || |||||||| | || | |||||||||||
Sbjct 373345 TCGAGTTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCC 373404
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941
| || ||| || || || | ||||| || | |||||| |||| || ||
Sbjct 373405 TGAATCTTTGACTTAAC--AT--TGTCGATGGTATCGGACGACTCGACCTCAAGAGTGAT 373460
Query 34942 GGTCTTTCCCGTGAGGGTCTTTAC 34965
|||||| || ||||||||||| ||
Sbjct 373461 GGTCTTGCCAGTGAGGGTCTTGAC 373484
>seq897
Length=630099
Score = 98.7 bits (108), Expect = 6e-16
Identities = 134/185 (72%), Gaps = 8/185 (4%)
Strand=Plus/Plus
Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847
||||||| ||||| ||||| || || | || |||| || || ||||| || |||||||
Sbjct 140502 CCTTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCGAGCTGCTTACCAGCGAAGA 140561
Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907
||||||| || ||||| | || | ||||||||||| | || || ||||| ||
Sbjct 140562 TCAGTCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGAC--AT- 140618
Query 34908 CTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963
| ||||| || || |||||| || | ||| |||||||| ||||| ||||||||
Sbjct 140619 -TGTCGATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTC 140677
Query 34964 ACAAA 34968
|| ||
Sbjct 140678 ACGAA 140682
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 325685881368917
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |