Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702575 .1_202016-08-10] 1,743 sequences; 51,983,016 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq1024 196 7e-44 seq14 118 2e-20 >seq1024 Length=868656 Score = 196 bits (216), Expect = 7e-44 Identities = 356/507 (70%), Gaps = 12/507 (2%) Strand=Plus/Minus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| |||||||| || ||||| ||||| ||||| ||||| || |||||| | || | Sbjct 775990 GATTTGGCAAATGTAC-AAGAAGGCTGAGGCTTCCTTCTGGACTGCTGAGGAGATTGATC 775932 Query 1455835 TCGGCGCCGA-CACGGTCCACTGGGTGT--CGC-TGAGCGACGACGAGCGCCATTTCATC 1455890 | | || | | | ||||| ||| ||| | ||| |||| ||| || Sbjct 775931 TTTCCAAGGATCTCCATG-ACTGGAACAACCGCCTGACTGCCGATGAGCAGTTCTTCGTC 775873 Query 1455891 AAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGG 1455950 ||| |||| || ||||||||| ||| ||||| || || ||||||||| | || Sbjct 775872 TCTCACATCCTTGC-TTTTTTCGCTGCCTCTGATGGTATTGTCAACGAGAACCTCGTCGA 775814 Query 1455951 CCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGC 1456010 || || | |||||||| | || ||||| |||| || ||||| ||||||||| Sbjct 775813 GCGATTCAGTGGCGAGGTCCAGATCCCCGAGGCTCGTTGCTTCTACGGCTTCCAGATCAT 775754 Query 1456011 CATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCC 1456070 || || ||||||||||| || |||||||| || || || ||||||||| ||||||| || Sbjct 775753 GATGGAGAACATCCACTCCGAGACCTACTCCCTGCTCATTGACACCTACATCAAGGAGCC 775694 Query 1456071 GGTCGAGAAGGACC-ACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGG 1456129 | | || | ||| |||||||| |||||| || || | || | | | || |||| Sbjct 775693 CGCCCAGC-GAACCTACCTCTTTAACGCCATTGAGACCATCCCCTGCATCCGAAAGAAGG 775635 Query 1456130 CCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGT 1456189 |||||||||| || |||||| | | | || ||| || |||||| |||| ||||| Sbjct 775634 CCGACTGGGCCATCCGATGGATCCAGGA-TAAGGACTCCTCA-TTTGCCCAGCGTCTCGT 775577 Query 1456190 CGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCT 1456248 | || || || || ||||| ||||| ||| || ||| | | ||||| ||||| Sbjct 775576 TGCTTTCGCTGCTGTTGAGGGTATCTTCTTCAGTGGTGCCTTCGCCTCTATCTTCTGGCT 775517 Query 1456249 CAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 ||||||||| || |||||||||||||| Sbjct 775516 CAAGAAGCGTGGTCTCATGCCCGGTCT 775490 Score = 86.0 bits (94), Expect = 9e-11 Identities = 168/243 (69%), Gaps = 4/243 (2%) Strand=Plus/Minus Query 1456532 GAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCGCTCATCGGC 1456591 || |||||| ||| ||| | ||||| ||| ||| | || || || || ||||| Sbjct 775371 GATGCCGTCACGATTGAGCAGGAGTTCCTCACTGAGGCTCTTCCCTGTGCCCTTCTCGGC 775312 Query 1456592 ATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCCTGCTCGCGG 1456651 |||||| | | |||||| ||||||||||| || ||||| || || || || | | Sbjct 775311 ATGAACTCTGAC-CTCATGAAGCAGTACATTGAGTTC-GTCGCTGATCGTCTCCTTGTCG 775254 Query 1456652 CGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATGGAGTTGATC 1456711 |||| ||| || ||||| ||| | | ||||||| ||| | |||||| ||| Sbjct 775253 CGCTTGGCAACG-AGAAGGTTTACAAGGCCACCAACCCCTTCGACTTCATGGAGAACATC 775195 Query 1456712 TCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCG-TGGCGAGTACGCCAAGGCCGGC 1456770 || || | |||||||||||||| |||||| || | || ||| ||| |||||||| Sbjct 775194 TCCCTTGGTGGCAAGACCAACTTCTTCGAGAAGCGTGTTGCCGACTACCAGAAGGCCGGT 775135 Query 1456771 GTC 1456773 ||| Sbjct 775134 GTC 775132 >seq14 Length=757373 Score = 118 bits (130), Expect = 2e-20 Identities = 181/258 (70%), Gaps = 0/258 (0%) Strand=Plus/Plus Query 259925 CCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGGAC 259984 ||||||||||| || |||||||| || | || || || || ||||| || | || Sbjct 526332 CCCACGCTCTTCAACGCCGGCACCCCTCAGCCCCAATTGTCATCTTGCTTCTTGGTTGAT 526391 Query 259985 ATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTCC 260044 ||||||| ||| || ||||| ||||| || || |||||| || || | |||||| Sbjct 526392 ATGAAGGACGACAGTATTGAGGGAATCTACGATACTCTCAAGACCTGTGCCATGATCTCC 526451 Query 260045 AAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTACGTG 260104 ||| ||| || || || ||| | || ||| | || || | ||| ||||| | Sbjct 526452 AAGATGGCTGGTGGTATTGGTCTGAACGTGCACCGTATCCGTGCTACTGGCTCCTACATC 526511 Query 260105 GCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACACG 260164 || || |||||||| || ||||| |||| || |||||||| || || ||| |||| Sbjct 526512 GCCGGTACCAACGGTACATCGAACGGTGTTGTTCCTATGCTTCGTGTCTTCAACAACACT 526571 Query 260165 GCGCGCTACGTCGACCAG 260182 || ||||| ||||||||| Sbjct 526572 GCTCGCTATGTCGACCAG 526589 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177643084446366