Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702575
.1_202016-08-10] 1,743 sequences; 51,983,016 total letters
Query= NC_026922.1
Length=157977
Score E
Sequences producing significant alignments: (Bits) Value
seq391 131 2e-25
seq1013 125 7e-24
>seq391
Length=449679
Score = 131 bits (144), Expect = 2e-25
Identities = 165/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546
|| || | ||| || | || ||||| || ||||| ||||| ||||||||||| ||
Sbjct 373552 CCACCACGGAGGCGGAGAACAAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGAG 373611
Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606
| ||| | ||| || ||||| ||||| || |||||||| || ||||| ||||| ||
Sbjct 373612 AGAGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAAAATCAAGCGTTGCTGGTCGGGGGGG 373671
Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666
||||| || || || ||||| || ||||| ||| | |||||||| || || ||
Sbjct 373672 ATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATAGTGTCGGAAGACTCAACC 373731
Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
||||| || ||||| || ||||| || || || ||||| || |||||
Sbjct 373732 TCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 373778
Score = 116 bits (128), Expect = 4e-21
Identities = 156/217 (72%), Gaps = 0/217 (0%)
Strand=Plus/Plus
Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546
|| || | ||| || | ||||| || || || |||||||| ||||||||||||||| ||
Sbjct 373270 CCACCACGGAGGCGGAGGACGAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCGGCA 373329
Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606
| ||| | || ||||| || || || ||||| |||| |||||||| || || ||
Sbjct 373330 AGGGTTCGGCCATCTTCGAGTTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGAGGG 373389
Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666
||||| || || || ||||| ||| || || ||| | || |||||||| || ||
Sbjct 373390 ATGCCCTCCTTGTCCTGAATCTTTGACTTAACATTGTCGATGGTATCGGACGACTCGACC 373449
Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGA 134703
|| ||||| ||||| || || || | || || ||||
Sbjct 373450 TCAAGAGTGATGGTCTTGCCAGTGAGGGTCTTGACGA 373486
Score = 105 bits (116), Expect = 7e-18
Identities = 154/218 (71%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555
||||| | |||||||| || || || ||||| |||||||||||||||| | |||| ||
Sbjct 372823 AGTCGGAGAACGAGGTGAAGAGTTGACTCCTTCTGAATGTTGTAGTCGCTTAAGGTGCGA 372882
Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615
|| || | ||| || || || || || | |||||| ||||| || || || || ||
Sbjct 372883 CCATCTTCCAACTGCTTACCAGCGAAGATAAGACGCTGTTGATCAGGGGGAATACCCTCC 372942
Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675
|| || ||||| || || || ||| | ||||| || || || || || ||
Sbjct 372943 TTGTCCTGAATCTTGCTCTTCACGTTGTCGATAGTGTCACTGGACTCGACCTCAAGGGTG 373002
Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
||||| || ||||| | ||| || || ||||| |||||
Sbjct 373003 ATGGTCTTTCCGGTGAGAGTCTTCACAAAAATCTGCAT 373040
Score = 93.3 bits (102), Expect = 4e-14
Identities = 143/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 134510 GTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTG 134569
||| || || |||||||| ||||||||||||||| || || | || || || ||
Sbjct 373065 GTGGAGAGTAGATTCCTTCTGAATGTTGTAGTCGGAAAGAGTTCGGCCATCTTCAAGTTG 373124
Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629
||||| || || || | ||||| |||||||| || || || || || || || || ||
Sbjct 373125 CTTGCCAGCGAAGATGAGTCGCTGTTGATCGGGAGGAATACCCTCCTTGTCCTGGATCTT 373184
Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689
|| || || | || ||||| || || || || ||||||||||| || || ||
Sbjct 373185 GCTCTTCACATTATCAATGGTATCGGATGACTCGACTTCCAGAGTAATGGTCTTTCCAGT 373244
Query 134690 TAAAGTTTTAACGAAAATTTGCAT 134713
| || || ||||| ||||||||
Sbjct 373245 GAGGGTCTTGACGAAGATTTGCAT 373268
>seq1013
Length=689792
Score = 125 bits (138), Expect = 7e-24
Identities = 170/237 (72%), Gaps = 0/237 (0%)
Strand=Plus/Minus
Query 134481 GCCTTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAG 134540
||| | || || | ||| || | || ||||| || ||||| ||||| || |||||||||
Sbjct 114706 GCCATACCACCACGGAGGCGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAG 114647
Query 134541 TCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCG 134600
|||| | |||| | || |||||||| ||||| ||||| || | |||||||| ||
Sbjct 114646 TCGCTCAGGGTGCGTCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCA 114587
Query 134601 GGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGAT 134660
|| || ||||| || || || || || || ||||| ||| | |||||||| ||
Sbjct 114586 GGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGAC 114527
Query 134661 TCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717
||||| || || || || || || || || | || || |||||||| ||||| |||
Sbjct 114526 TCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTTG 114470
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 505387388632360
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