Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702575
.1_202016-08-10] 1,743 sequences; 51,983,016 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq14 259 6e-64
seq1024 143 3e-29
>seq14
Length=757373
Score = 259 bits (286), Expect = 6e-64
Identities = 1143/1783 (64%), Gaps = 41/1783 (2%)
Strand=Plus/Plus
Query 104221 CCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGT 104280
||| ||| ||||| ||||||| ||| | | |||||| || || || || || ||
Sbjct 526223 CCCTCAGCACATGATCATGCGTGTGTCTGTTGGTATTTGGGGTGATGATATCGAGCGAGT 526282
Query 104281 CTTGGAGACATACGACAAGATGTCCCAAGGTA--TGTTCATTCACGCAACACCAACCCTC 104338
||||||||||||| || ||||||| || | | |||| || || | || || |||
Sbjct 526283 CTTGGAGACATACAACCTGATGTCC--AGCAAATTCTTCACACATGCTTCTCCCACGCTC 526340
Query 104339 TTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAG 104398
||||| || || || || |||||| |||| ||||||| | | | | |||||
Sbjct 526341 TTCAACGCCGGCACCCCTCAGCCCCAATTGTCATCTTGCTTCTTGGTTGATATGAAGGAC 526400
Query 104399 GACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCT 104458
||| || | || ||||| | ||||| | | ||||| ||||| ||| ||||
Sbjct 526401 GACAGTATTGAGGGAATCTACGATACTCTCAAGACCTGTGCCATGATCTCCAAGATGGCT 526460
Query 104459 GGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTAT-TCGGGGG-A 104516
|| |||||||| || || | || | | | || | | ||| || ||| || |
Sbjct 526461 GGTGGTATTGGTCTGAACGTGCACCGTATCCGTGCTACTGG--CTCCTACATCGCCGGTA 526518
Query 104517 CAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCT 104576
| || ||| ||| | ||| || |||| |||||||| || || ||| ||| || ||||
Sbjct 526519 CCAACGGTACATCGAACGGTGTTGTTCCTATGCTTCGTGTCTTCAACAACACTGCTCGCT 526578
Query 104577 ATGTAAATCAAGCTGGGCGT---CGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGC 104633
|||| | || | ||| ||| || || | || |||| || ||||| ||||
Sbjct 526579 ATGTCGACCAGGGTGGCAACAAGCGACCCGGTGCTTTTGCCATCTACCTCGAGCCTTGGC 526638
Query 104634 ACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGT 104693
|| | ||| || | ||||||||||| | ||| ||||| ||| | ||||||| ||
Sbjct 526639 ACTCTGATGTCTTCGAGTTCCTTGATCTCCGTAAGAACCACGGTAAAGAGGAGGTCCGTG 526698
Query 104694 GCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGA 104753
||| || || ||| ||| || ||||| || ||||| ||||||||| | ||||| |||
Sbjct 526699 CCCGTGACCTTTTCCTCGCCCTTTGGATCCCTGATCTTTTCATGAAGCGTGTTGAAAAGA 526758
Query 104754 GTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTG 104813
||| | ||| | || | || || || || ||||| ||| |||| | || |
Sbjct 526759 ACGGCGACTGGACGCTGATGTGCCCCAACGAGTGCCCTGGCCTCGCCGACTGCTACGGAG 526818
Query 104814 AGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGC--GACGGT 104871
||||||| || || || ||| ||||||||| |||| ||| | | | | || ||| |
Sbjct 526819 AGGAGTTCGAGGCTCTGTACGAAAAGTACGA-GAAGGAGGGCAAGGGTC-GCAAGACTAT 526876
Query 104872 GCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATA 104931
||| | | ||| | || ||||| || | || || ||||| || | ||||
Sbjct 526877 CAAGGCTCAGAAACTTTGGTACGCCATTCTTGAGGCCCAGACTGAGACCGGAAACCCATT 526936
Query 104932 CATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAA 104991
|||||| ||||| || ||||| |||| ||||| || |||||||| | ||| |||
Sbjct 526937 CATGCTCTACAAGGATGCCTGCAACCGCAAGAGCAACCAAAAGAACCTCGGTACCATCCG 526996
Query 104992 GAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTG 105051
|| ||||| || || || ||||| | || | | | || ||| ||||| ||
Sbjct 526997 AAGCTCCAACCTGTGCACTGAAATTATTGAGTACTGTGCCCCTGACGAGGTCGCTGTCTG 527056
Query 105052 TAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTT----- 105106
||||| || || | ||||| ||| | | | || || || | || ||
Sbjct 527057 CAACCTTGCCTCTCTGGCTCTGCCC---TCT-TTCAT-CAACTACGATGAGGCTTGCTAC 527111
Query 105107 GATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATT 105166
|| | | || | ||| | || | | ||| | ||||| |||| | ||
Sbjct 527112 GACTTCAAGAAGTTGCACAAGGTCAGTCAGGTTGTTATTCGCAACCTGAACAAGATCATC 527171
Query 105167 GATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATT 105226
||| || ||||| || || ||||| || ||| ||| | ||||| || |||
Sbjct 527172 GATGTGAACCACTACCCTGTCCAGGAGGCTCGCAACAGTAACATGCGCCACCGACCCATT 527231
Query 105227 GGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATT-CTTTGTCGCCACGCATTTGATTC 105285
||||| ||||||||||| || || |||| ||| || || || ||| | || || ||
Sbjct 527232 GGTCTTGGTGTTCAGGGCCTTGCCGATGCTTTCCTTGCTCTG-CGCATGCCCTTCGAGTC 527290
Query 105286 CGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGA 105345
||| || || |||| || || || |||||||| || ||||| || ||
Sbjct 527291 ACCCGAGGCTCGTGAGCTCAACAAGCAGATCTTCGAGACCATTTACCACGCTGCCCTCAC 527350
Query 105346 GGC--GAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCA 105403
|| || | || |||| ||| || ||||| || ||||| | ||||| ||
Sbjct 527351 TGCCTCCGTGC--AGCTGGCTAAGGAGGAGGGTCCCTACTCCACCTTCAAAGGTTCCCCC 527408
Query 105404 GCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACTACGAC 105463
|| || | || | || || || || |||||| | | || || | || |||
Sbjct 527409 GCCTCTGAGGGTATCCTCCAGTTCGACATGTGGAACGTCAAGCCCTCTGACCTCTGGGAC 527468
Query 105464 TGGGAAGCTC-TCAAG-GAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGG 105521
||||| ||| || || | | | ||||| | || | ||||||||||| ||| | |
Sbjct 527469 TGGGAGACTCTTCGAGAGGAAG--TCAAGACACACGGCATCCGTAACAGTCTGCTCCTTG 527526
Query 105522 CTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCT 105581
|||| ||||| || ||| ||| | || || |||| || || || ||||| || ||||
Sbjct 527527 CTCCTATGCCTACTGCCAGTACCTCCCAGATTCTGGGCAACAACGAGTGCTTCGAGCCCT 527586
Query 105582 ACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGC 105641
|||| | |||||||| | || | ||||| || ||||| | ||||||||
Sbjct 527587 ACACCTCCAACATCTACCAACGACGTGTTCTCGCTGGTGAGTTCCAGGTTGTCAACCCCT 527646
Query 105642 ATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCATGG 105701
|| | | ||||| || || ||||| |||||| | | ||||||| | | |||
Sbjct 527647 GGCTGCTCAAGGACCTTGTCGACATGGGTCTGTGGTCCGATGCTATGAAGAACCGCATCA 527706
Query 105702 TGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAAATGAAATTAAGAAGTTGT 105761
| | | |||||||||||| || ||| | || || || | ||| |||
Sbjct 527707 TTGCTGAGAATGGTTCCATTCAGAACATTCCCAACATCCCTGCCGATGTCAAGGCTCTGT 527766
Query 105762 ACCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATTGACATGGCCGCAGATCGTGGTC 105821
| || |||||||| ||| | | ||| || | ||||| || ||||| |||
Sbjct 527767 ATAAGACCGTTTGGGAGATCTCTCAGCGCCAAGTCGTTCAGATGGCTGCTGATCGAGGTG 527826
Query 105822 GCTTCATTGATCAAAGTCAAAGT--ATGAATCTCTTCATGGAAAGTCCAACGATGTCCAA 105879
||||||||||| |||| ||| |||| || |||| || || |||||| |||
Sbjct 527827 CCTTCATTGATC--AGTCCCAGTCACTGAACATCCACATGAAAGACCCCACGATGGGCAA 527884
Query 105880 GCTCTCTTCTATGCACATGTACA-GTTGGAAGAAGGGTCTCAAAACGGGGATGTATTACC 105938
| || | ||||||| | | || | |||||| || ||||| || || ||||| ||||
Sbjct 527885 GATCACCAGTATGCAC-TTTGCAGGCTGGAAGCTTGGCCTCAAGACTGGCATGTACTACC 527943
Query 105939 TCCGATCTAAGGCAAAGGCGCGCCCAATTCAGTTCAGTCTTGA 105981
| || | |||| || || |||||||||| | ||||
Sbjct 527944 TTCGTACACAGGCTGCTGCTGCTCCTATTCAGTTCACTGTTGA 527986
>seq1024
Length=868656
Score = 143 bits (158), Expect = 3e-29
Identities = 179/243 (74%), Gaps = 2/243 (1%)
Strand=Plus/Minus
Query 94714 CTCTTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAG 94773
|||||| | ||||| | || | || || || | |||||| || || ||||| ||
Sbjct 775677 CTCTTTAACGCCATTGAGACCATCCCCTGCATCCGAAAGAAGGCCGACTGGGCCATCCGA 775618
Query 94774 TGGTTTGAT-ACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGA 94832
||| | | | || | | | | | ||||| |||| ||| | || || || ||||||
Sbjct 775617 TGGATCCAGGATAAGGACTCCT-CATTTGCCCAGCGTCTCGTTGCTTTCGCTGCTGTTGA 775559
Query 94833 GGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCAT 94892
||||||||||||| |||| ||||| | |||| | |||||||||||||| ||||||||
Sbjct 775558 GGGTATCTTCTTCAGTGGTGCCTTCGCCTCTATCTTCTGGCTCAAGAAGCGTGGTCTCAT 775499
Query 94893 GCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTT 94952
||| ||||| ||||||||||||||| ||||||||||| ||||| || ||| || ||
Sbjct 775498 GCCCGGTCTGACCTTCTCCAACGAGCTCATCTCTCGTGATGAGGGTCTTCACACTGACTT 775439
Query 94953 TGC 94955
|||
Sbjct 775438 TGC 775436
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583248092205320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |