Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702575 .1_202016-08-10] 1,743 sequences; 51,983,016 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq14 223 4e-53 >seq14 Length=757373 Score = 223 bits (246), Expect = 4e-53 Identities = 520/775 (67%), Gaps = 22/775 (3%) Strand=Plus/Plus Query 53180 CCTCAGTATCTTTTCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTC 53239 |||||| | | ||||||| || | | ||||| ||||| || | ||| ||| Sbjct 526224 CCTCAGCACATGATCATGCGTGTGTCTGTTGGTATTTGGGGTGATGATATCGAGCGAGTC 526283 Query 53240 CGTGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTC 53299 ||||| ||| || | ||| | || | ||| || || || | || || || ||| Sbjct 526284 TTGGAGACATACAACCTGATGTCCAGCAAATTCTTCACACATGCTTCTCCCACGCTCTTC 526343 Query 53300 AACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGAC 53359 ||||| || || ||| || || |||| |||||| |||| | |||||||| ||| Sbjct 526344 AACGCCGGCACCCCTCAGCCCCAATTGTCATCTTGCTTCTTGGTTGATATGAAGGACGAC 526403 Query 53360 TCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGT 53419 || || || |||||||| || |||||| |||||| ||||||||| | | ||| Sbjct 526404 AGTATTGAGGGAATCTACGATACTCTCAAGACCTGTGCCATGATCTCCAAGATGGCTGGT 526463 Query 53420 GGTATCGGTATCCAC-TGCTC-GAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGA 53477 ||||| ||| | || ||| | | | ||||||| | ||| | ||| || || | Sbjct 526464 GGTATTGGTCTGAACGTGCACCGTA--TCCGTGCTACTGGCTCCTACATCGCCGGTACCA 526521 Query 53478 ACGG--CGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTA 53535 |||| | ||| | || | || |||||||| || |||||||||||||| || || || Sbjct 526522 ACGGTACATCGA--ACGGTGTTGTTCCTATGCTTCGTGTCTTCAACAACACTGCTCGCTA 526579 Query 53536 CGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCA 53595 ||| |||||||||| ||||| || | || ||||||||||||||||| ||||| Sbjct 526580 TGTCGACCAGGGTGGCAACAAGCGACCCGGTGCTTTTGCCATCTACCTCGAGCCTTGGCA 526639 Query 53596 CGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTG 53655 | | || | | ||||| || || || ||| ||| || ||| | || ||| | || Sbjct 526640 CTCTGATGTCTTCGAGTTCCTTGATCTCCGTAAGAACCACGGTAAAGAGGAGGTCCGTGC 526699 Query 53656 CCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGA 53715 ||||||||| || || || ||||| || || || |||||| | || || ||| | Sbjct 526700 CCGTGACCTTTTCCTCGCCCTTTGGATCCCTGATCTTTTCATGAAGCGTGTTGAAAAGAA 526759 Query 53716 CGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTC-CAGGGTGTCTACGGTG 53774 || || ||| ||||||||||| ||||||||||| |||||| | | || |||||| | Sbjct 526760 CGGCGACTGGACGCTGATGTGCCCCAACGAGTGCCCTGGCCTCGCCGACTG-CTACGGAG 526818 Query 53775 AGGAGTTTAACGAGATGTATCGGACGTAC-----GCAGTTC-AGGGCCGCTACAAGAAGA 53828 ||||||| | | |||| | |||| | || | |||| ||| |||| Sbjct 526819 AGGAGTTCGAGGCTCTGTACGAAAAGTACGAGAAGGAGGGCAAGGGTCGC------AAGA 526872 Query 53829 AGGTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGC 53888 ||||||| | | | ||| | || || || || |||| ||||| |||| | Sbjct 526873 CTATCAAGGCTCAGAAACTTTGGTACGCCATTCTTGAGGCCCAGACTGAGACCGGAAACC 526932 Query 53889 CGTACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGG 53943 | | |||| |||||||||| | |||| ||||||||||| |||||| |||| Sbjct 526933 CATTCATGCTCTACAAGGATGCCTGCAACCGCAAGAGCAACCAAAAGAACCTCGG 526987 Score = 89.7 bits (98), Expect = 6e-13 Identities = 530/830 (64%), Gaps = 54/830 (7%) Strand=Plus/Plus Query 55127 GTTGTGACTCGGAACCTGAACCGGGTCATCGACAAGAATTACTACCCGACTGAAGCGGCG 55186 ||||| | ||| ||||||||| | ||||||| ||| ||||||| | | ||| Sbjct 527142 GTTGTTATTCGCAACCTGAACAAGATCATCGATGTGAACCACTACCCTGTCCAGGAGGCT 527201 Query 55187 CGCAAGTCCAACCTCCGGCACCGGCCCATCGCCATCGGTGTACAGGGCTTGGCCGACATC 55246 ||||| ||| | || ||||| ||||| | | ||||| |||||| | ||||| Sbjct 527202 CGCAACAGTAACATGCGCCACCGACCCATTGGTCTTGGTGTTCAGGGCCTTGCCGATGCT 527261 Query 55247 TTCATGATGCTCGGAT--TGCCCTTCGACTCGGAACCT--GCTCGAGAAATTAACCAGGA 55302 ||| | ||||| | |||||||||| || | || ||||| || | ||| || | Sbjct 527262 TTCCT--TGCTCTGCGCATGCCCTTCGAGTC--ACCCGAGGCTCGTGAGCTCAACAAGCA 527317 Query 55303 CATCTTC-AGTCGCATCTACTTTGCAGCGCTCGAGGAGTC-GTGTCATCTGGCTATGAGC 55360 |||||| || | ||| ||| || || ||| | || ||| || ||||||| | Sbjct 527318 GATCTTCGAGAC-CATTTACCACGCTGCCCTCACTGCCTCCGTG-CAGCTGGCTAAGGAG 527375 Query 55361 GAGGGGACCTACGAGACGTTCCGTGATTCGCCAGCTGACAAGGGACTTCTCCAGTTCGAT 55420 ||||| ||||| || ||| | ||| || || |||| | ||||||||||| Sbjct 527376 GAGGGTCCCTACTCCACCTTCAAAGGTTCCCCCGCCTCTGAGGGTATCCTCCAGTTCGAC 527435 Query 55421 CTATGG---GGCAAG---TCTGACCCCATG---TTTGACA-------AGTTGAAG-CATG 55463 | ||| | |||| ||||||| | | | || | || |||| || | Sbjct 527436 ATGTGGAACGTCAAGCCCTCTGACCTCTGGGACTGGGAGACTCTTCGAGAGGAAGTCAAG 527495 Query 55464 ACATTCACTTGTGGGGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGA 55523 ||| ||| ||| | || ||| |||||| | || || ||||| || || | Sbjct 527496 ACA--CAC------GGCATCCGTAACAGTCTGCTCCTTGCTCCTATGCCTACTGCCAGTA 527547 Query 55524 CGGCTCAGATCATGGGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGC 55583 | | ||||| |||||||||||||| |||||||| ||||| |||||||||||| | Sbjct 527548 CCTCCCAGATTCTGGGCAACAACGAGTGCTTCGAGCCCTACACCTCCAACATCTACCAAC 527607 Query 55584 GCCGGACCCTAGCAGGTGAGTTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGA 55643 | || || || |||||||| | ||||| || |||||||||| Sbjct 527608 GACGTGTTCTCGCTGGTGAGTTCCAGGTTGTCAACCCCTGGCTGCTCAAGGACCTTGTCG 527667 Query 55644 AGATCAACAAGTGGAACCCGCAG--ATCAAGA--CGGAT-ATTGTGCGGAACGGGGGGTC 55698 | || |||| ||| | || |||| || || |||| ||| || || Sbjct 527668 ACATGGGTCTGTGGT--CCGATGCTATGAAGAACCGCATCATTGCTGAGAATGGT---TC 527722 Query 55699 CGTCCAGAA---TCTGGAGATTCCTCTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGA 55755 | | ||||| || | || ||| | |||||| | || ||| || ||||| Sbjct 527723 CATTCAGAACATTCCCAACATCCCTGCCGATGTCAAGGCTCTGTATAAGACCGTTTGGGA 527782 Query 55756 GATTCCACAGAAG--AGTCTGATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAG 55813 ||| | ||| |||| || | ||| ||||||||| ||||| | ||| || ||| Sbjct 527783 GATCTCTCAGCGCCAAGTCG--TTCAGATGGCTGCTGATCGAGGTGCCTTCATTGATCAG 527840 Query 55814 TCCCAGTCTCTGAACATCTTCATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCAC 55873 |||||||| ||||||||| |||| | | || | ||| |||| | | | |||||| Sbjct 527841 TCCCAGTCACTGAACATCCACATGAAAGACCCCACGATGGGCAAGATCACCAGTATGCAC 527900 Query 55874 TTTTACGGGTGGAAGAAGGGACTCAAGACGGGTATGTACTATCTGCGGAC 55923 ||| || |||||| || |||||||| || |||||||| || || || Sbjct 527901 TTTGCAGGCTGGAAGCTTGGCCTCAAGACTGGCATGTACTACCTTCGTAC 527950 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547204077531400