Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702615
.1_202016-08-10] 3,557 sequences; 56,803,069 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq2893 185 1e-41
>seq2893
Length=1271672
Score = 185 bits (204), Expect = 1e-41
Identities = 572/880 (65%), Gaps = 10/880 (1%)
Strand=Plus/Plus
Query 53785 GATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAA 53844
|||||| || | || | ||| || ||||| ||| || |||||||| || || |||||
Sbjct 1164436 GATGGTACCGAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAA 1164495
Query 53845 TGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTAT 53904
||| | || || ||| |||||| || | ||| || | ||| | ||||||| ||
Sbjct 1164496 TGGGTTTCCGGTCTCAGTCTGGGCCTCAAGAATGGCGTACCAAAGTTTCTGAGCCTTGAT 1164555
Query 53905 TATAGATTTGTATCTCTTTTCT--CTT-TCGTATAGTGTATACAATCGTTCAAACTCGTC 53961
|| ||| | ||| | ||| ||||| | |||| || ||||| ||
Sbjct 1164556 ---AGTCTTGCGACCCTTGCCCTCCTTCTCGTACTTTTCGTACAGAGCCTCGAACTCCTC 1164612
Query 53962 TCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTC 54021
||| | | | | | ||||| || || | || ||||||| || ||| || ||||
Sbjct 1164613 TCCGTAGCAGTCGGCGAGGCCAGGGCACTCGTTGGGGCACATCAGCGTCCAGTCGCCGTT 1164672
Query 54022 ATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGT 54081
| | || || ||||| || |||||||| |||||||| || | || || || | ||
Sbjct 1164673 CTTTTCAACACGCTTCATGAAAAGATCAGGGATCCAAAGGGCGAGGAAAAGGTCACGGGC 1164732
Query 54082 TCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATG 54141
| ||||| || || ||||| ||||| |||||| | | | |||||| ||
Sbjct 1164733 ACGGACCTCCTCTTTACCGTGGTTCTTACGGAGATCAAGGAACTCGAAGACATCAGAGTG 1164792
Query 54142 CCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTA 54201
||| || || | ||| |||| | | | || || || ||||| || ||||| || | ||
Sbjct 1164793 CCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTCGCTTGTTGCCACCCTGGTCGACATA 1164852
Query 54202 TCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGT 54261
| ||| ||||| || | || | | ||| |||| || ||| || |||| ||| |||||
Sbjct 1164853 GCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAACACCGTTCGATGTACCGTTGGT 1164912
Query 54262 CCCGGAGATATAGCTTCCACTGGCACGAATAT--TACTAATTGATAGACCTATCCCCCCT 54319
|||| ||||||| ||| | ||||| ||| | | || | |||| || || ||
Sbjct 1164913 ACCGGCGATATAGGAGCCAGTAGCACGGATACGGTGCACGTTCA--GACCAATACCACCA 1164970
Query 54320 GCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCA 54379
||||| || ||||| | || || || | ||||| ||||| ||||| ||||| ||
Sbjct 1164971 GCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCGTAGATTCCCTCAATACTGTCG 1165030
Query 54380 TCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAAT 54439
||| |||| | || | || || |||| |||| | || || || || || ||
Sbjct 1165031 TCCTTCATATCAACCAAGAAGCAAGATGACAATTGGGGCTGAGGGGTGCCGGCGTTGAAG 1165090
Query 54440 AAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCT 54499
| || ||||| || || || || |||| || | || ||||| ||||| | ||
Sbjct 1165091 AGCGTGGGAGAGGCATGTGTGAAGAATTTGCTGGACATCAGGTTGTATGTCTCCAAGACT 1165150
Query 54500 GAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTT 54559
|| ||||| ||| || || | |||||||| | |||||||||||| |
Sbjct 1165151 CGCTCGATATCATCACCCCAAATACCAACAGACACACGCATGATCATGTGCTGAGGGCGC 1165210
Query 54560 TCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAA 54619
|| || ||||| || || || || | ||| ||| |||||||| || || |||||
Sbjct 1165211 TCGACAATCTTACCGTCAATCTTGAGGAGGTATGATCGCTCCAAAGTCTTGAAGCCAAAG 1165270
Query 54620 TAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGT 54659
|| | |||| || || || || || | ||| | ||||
Sbjct 1165271 TATTGGTATTGGAAATCGCGGTCATAGACAATGGCAGAGT 1165310
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593695201653360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |