Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702615
.1_202016-08-10] 3,557 sequences; 56,803,069 total letters
Query= NC_002169.1
Length=135611
Score E
Sequences producing significant alignments: (Bits) Value
seq579 134 1e-26
seq102 131 1e-25
seq3046 109 5e-19
>seq579
Length=310369
Score = 134 bits (148), Expect = 1e-26
Identities = 155/209 (74%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
|||| ||||| || ||||| || || |||||||| ||||||| ||||| |||||||
Sbjct 279222 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGTCCATCCTCG 279281
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649
||||| || ||||| ||||||| |||||||| || || || ||||||||||||||
Sbjct 279282 AGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 279341
Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709
|| || || || | |||| |||||| | ||| ||||| | ||| | ||| ||
Sbjct 279342 ATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTC 279401
Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|| || || || || || |||||||||||
Sbjct 279402 CCCGTGAGGGTCTTGACGAAAATCTGCAT 279430
>seq102
Length=1299131
Score = 131 bits (144), Expect = 1e-25
Identities = 147/197 (75%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601
|| ||||| || || |||||||| ||||||| ||||| ||| || | ||| || |||
Sbjct 988212 GTTGACTCCTTCTGGATGTTGTAGTCGCTCAAGGTGCGACCATCTTCCAACTGCTTACCA 988153
Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661
||| |||| |||||||| ||||| || || || ||||||||||| ||| || ||
Sbjct 988152 GCGAAGATAAGACGCTGTTGATCAGGGGGAATACCCTCCTTGTCCTGAATCTTGCTCTTC 988093
Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721
|| | |||| ||||| || ||||||||| | ||| | || || ||||| |||||
Sbjct 988092 ACGTTGTCGATAGTGTCACTGGACTCGACCTCAAGGGTGATGGTCTTTCCGGTGAGAGTC 988033
Query 118722 TTTACAAAAATCTGCAT 118738
|| ||||||||||||||
Sbjct 988032 TTCACAAAAATCTGCAT 988016
Score = 109 bits (120), Expect = 5e-19
Identities = 135/185 (73%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601
||||| || || ||||||||||| ||| | || || ||| ||||| || ||||||
Sbjct 987756 GTAGATTCCTTCTGAATGTTGTAGTCGGCAAGGGTTCGGCCATCTTCGAGTTGCTTTCCA 987697
Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661
|| |||| ||||||||||| || ||||| |||||||||||||| ||| ||| |||
Sbjct 987696 GCAAAGATCAGACGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGAATCTTTGACTTA 987637
Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721
|| | |||| ||| || | ||||||||| | ||| | || ||||| || || ||
Sbjct 987636 ACATTGTCGATGGTATCGGACGACTCGACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTC 987577
Query 118722 TTTAC 118726
|| ||
Sbjct 987576 TTGAC 987572
Score = 105 bits (116), Expect = 6e-18
Identities = 142/198 (72%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601
|| ||||| || |||||||||||||| | |||||| ||||| ||||| || ||
Sbjct 987474 GTGGACTCCTTCTGAATGTTGTAATCAGAGAGAGTGCGGCCGTCCTCAAGCTGCTTGCCG 987415
Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661
||| | || | || ||||| ||||| || |||||||||||||| ||| || ||
Sbjct 987414 GCGAAAATCAAGCGTTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTTG 987355
Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721
|| | |||| ||||| | ||| ||||||| ||| | || |||||||||| ||
Sbjct 987354 ACATTGTCGATAGTGTCGGAAGACTCAACCTCGAGGGTGATGGTCTTGCCGGTCAAGGTC 987295
Query 118722 TTTACAAAAATCTGCATG 118739
|| || || |||||||||
Sbjct 987294 TTGACGAAGATCTGCATG 987277
Score = 102 bits (112), Expect = 7e-17
Identities = 92/116 (79%), Gaps = 0/116 (0%)
Strand=Plus/Minus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
|||||||||| ||||| || || ||||||||||| ||| | ||| || ||| ||
Sbjct 987996 ACCAAGTGGAGAGTAGATTCCTTCTGAATGTTGTAGTCGGAAAGAGTTCGGCCATCTTCA 987937
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645
|| || || |||||| ||||||| ||||| ||||||||||| || |||||||||||
Sbjct 987936 AGTTGCTTGCCAGCGAAGATGAGTCGCTGTTGATCGGGAGGAATACCCTCCTTGTC 987881
>seq3046
Length=363889
Score = 109 bits (120), Expect = 5e-19
Identities = 132/180 (73%), Gaps = 0/180 (0%)
Strand=Plus/Minus
Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610
|| || |||||||| ||| | ||| || |||||||||||| || |||||| ||||
Sbjct 198991 TTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCGAGCTGCTTACCAGCGAAGATC 198932
Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670
|| ||||| || || || || |||||||||||||| || || || || | |||
Sbjct 198931 AGTCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 198872
Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 118730
| |||||||| | ||||||||||| ||| | || ||||| ||||| || || || |||
Sbjct 198871 ATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAA 198812
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433811593045444
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |