Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702615 .1_202016-08-10] 3,557 sequences; 56,803,069 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq2893 109 1e-18 >seq2893 Length=1271672 Score = 109 bits (120), Expect = 1e-18 Identities = 614/963 (64%), Gaps = 34/963 (4%) Strand=Plus/Minus Query 248783 TGGACGGCGCGATTGACTACGGCAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACGC 248842 ||||| || |||| ||| | | ||||| | ||| | | ||||| ||||| || Sbjct 1165313 TGGACTCTGCCATTGTCTATGACCGCGATTTCCAATACCAATACTTTGGCTTCAAGACTT 1165254 Query 248843 TGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATTCAGCACATGT 248902 ||||| ||| || |||||||| ||||| || ||||| || || || |||||||||| Sbjct 1165253 TGGAGCGATCATACCTCCTCAAGATTGACGGTAAGATTGTCGAGCGCCCTCAGCACATGA 1165194 Query 248903 TGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAGCGTGCTCGAGACGTACA 248962 | ||||| ||| |||| || ||| ||||| || ||| | || | ||||| |||| Sbjct 1165193 TCATGCGTGTGTCTGTTGGTATTTGGGGTGATGATATCGAGCGAGTCTTGGAGACATACA 1165134 Query 248963 CCGGAATG---AGTGAACGCTGGATGACACATGCCACACCGACGCTCTTCAACGCCGGTA 249019 | ||| || || || | ||||||||| | || ||||||||||||||||| | Sbjct 1165133 ACCTGATGTCCAGCAAATTCT---TCACACATGCCTCTCCCACGCTCTTCAACGCCGGCA 1165077 Query 249020 -CCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGACTCTGTCGAC 249078 || ||| | || || || ||||| | ||| ||| | |||||| | | || Sbjct 1165076 CCCCTCAGC-CCCAATTGTCATCTTGCTTCTTGGTTGATATGAAGGACGACAGTATTGAG 1165018 Query 249079 GGCATTTATGACACGCTTAAACAGAC---GGCGAAGATTTCTAAATTCGCGGGCGGAATC 249135 || || || || || || | |||| || | ||| || || | || || || || Sbjct 1165017 GGAATCTACGATACTCTCA---AGACCTGTGCCATGATCTCCAAGATGGCTGGTGGTATT 1164961 Query 249136 GGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTACATCAAAGGTACAAATGGGGTC 249195 ||||| ||| | ||||| || | || || || ||| ||||| || || | Sbjct 1164960 GGTCTGAACGTGCACCGTATCCGTGCTACTGGCTCCTATATCGCCGGTACCAA-CGGTAC 1164902 Query 249196 AGTG-ATGGTATCGTACCCCTCCTTCGATGCTTTGAGTCCACCGCCAGGTTCATCAACCA 249254 | | | ||| | || || | ||||| ||| | ||| || | | || |||| Sbjct 1164901 ATCGAACGGTGTTGTTCCTATGCTTCGTGTCTTCAACAACACTGCTCGCTATGTCGACCA 1164842 Query 249255 GGCCGGGCGC---CGAAAGGGGTCGTTCGCCATGTATTTGGAAGTGTGGCACGCCGATAT 249311 || || | ||| || | || ||||| || | || |||||| | ||| | Sbjct 1164841 GGGTGGCAACAAGCGACCCGGTGCTTTTGCCATCTACCTCGAGCCTTGGCACTCTGATGT 1164782 Query 249312 ATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAACGAGCTCATGAGAGCGCGTGACCT 249371 || |||||||| || | |||||| |||| || ||| | | || |||||||| Sbjct 1164781 CTTCGAGTTCCTTGATCTCCGTAAGAACCACGGTAAAGAGGAGGTCCGTGCCCGTGACCT 1164722 Query 249372 CTTCTACGGCCTGTGGGTCTCCGACTTGTTCATGCGCCGCGTCAAGGCCGACGGCGATTG 249431 ||| || ||| ||| || | || | |||||| || || | ||||||| || Sbjct 1164721 TTTCCTCGCCCTTTGGATCCCTGATCTTTTCATGAAGCGTGTTGAAAAGAACGGCGACTG 1164662 Query 249432 GACGCTTCTTTCTCCGTCCGACGCCCCGGACCTCATCGATCTAC-ACGGCGCCGACTTCG 249490 |||||| | | || ||| ||| | |||| ||| || | |||| | || |||| Sbjct 1164661 GACGCTGATGTGCCCCAACGAGTGCCCTGGCCTCGCCGA-CTGCTACGGAGAGGAGTTCG 1164603 Query 249491 ACCAAGC-CTATAAGAAA--TACGAATCCAACGGCATCG---GCAAGACAATCAAGGCTC 249544 | || || || |||| ||||| | |||| | ||||||| |||||||||| Sbjct 1164602 ---AGGCTCTGTACGAAAAGTACGAGAAGGAGGGCAAGGGTCGCAAGACTATCAAGGCTC 1164546 Query 249545 GGACCCTTT-TTGCGAAGGTGGTGGAGTCCCAGATAGAGACAGGGGGGCCGTATTAT-TT 249602 || |||| | || | | ||| |||||| ||||| || || | | || | Sbjct 1164545 AGAAACTTTGGTACG-CCATTCTTGAGGCCCAGACTGAGACCGGAAACCCAT-TCATGCT 1164488 Query 249603 GTTCAAAGACGCGTGCAACGCCAAGAGTAACCAACGGCATCTTGGTACCATCCGCTCGTC 249662 | ||| || || |||||| |||||| |||||| | | || ||||||||||| || Sbjct 1164487 CTACAAGGATGCCTGCAACCGCAAGAGCAACCAAAAGAACCTCGGTACCATCCGAAGCTC 1164428 Query 249663 AAATCTCTGTGCAGAGGTGATTCAATACTCGTCCAAGGAGGAGATTGCCGTCTGCAACCT 249722 || || || | || | ||| | |||| || || ||| | || ||||||||||| Sbjct 1164427 CAACCTGTGCACTGAAATTATTGAGTACTGTGCCCCTGACGAGGTCGCTGTCTGCAACCT 1164368 Query 249723 GGC 249725 || Sbjct 1164367 TGC 1164365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073717464102976