Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702615 .1_202016-08-10] 3,557 sequences; 56,803,069 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq2893 293 2e-74 seq3041 145 7e-30 seq102 114 1e-20 seq579 107 2e-18 >seq2893 Length=1271672 Score = 293 bits (324), Expect = 2e-74 Identities = 639/954 (67%), Gaps = 2/954 (0%) Strand=Plus/Plus Query 23027 GAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACAT 23086 |||||||| ||||| || || |||||||| || |||||| | |||||| || || Sbjct 1164362 GAGGCAAGGTTGCAGACAGCGACCTCGTCAGGGGCACAGTACTCAATAATTTCAGTGCAC 1164421 Query 23087 AGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCC 23146 || ||| | || || || | || | |||||||| || || ||||| | |||| Sbjct 1164422 AGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGGCATCC 1164481 Query 23147 TTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATA 23206 |||||||||||| | || | || ||||| ||| | ||| | || || ||| | Sbjct 1164482 TTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCCTCAAGAATGGCGTACCAAAGT 1164541 Query 23207 GTCTGAGCGTGAACACGTCGCACGTACCT-GCCTTCTTCCTCGTACTTTTGGTACAACGC 23265 ||||||| | | | ||| || ||| ||| || | ||||||||||| ||||| || Sbjct 1164542 TTCTGAGCCTTGATA-GTCTTGCGACCCTTGCCCTCCTTCTCGTACTTTTCGTACAGAGC 1164600 Query 23266 GTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACT 23325 || || || | ||||| |||||||| ||||| || | | | || ||||| || | Sbjct 1164601 CTCGAACTCCTCTCCGTAGCAGTCGGCGAGGCCAGGGCACTCGTTGGGGCACATCAGCGT 1164660 Query 23326 CCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAA 23385 ||| || |||||||| || |||| |||||||| || ||||| || ||| ||| Sbjct 1164661 CCAGTCGCCGTTCTTTTCAACACGCTTCATGAAAAGATCAGGGATCCAAAGGGCGAGGAA 1164720 Query 23386 CAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAA 23445 || || ||||| || ||||||||||| ||| |||||| | ||| | || || || Sbjct 1164721 AAGGTCACGGGCACGGACCTCCTCTTTACCGTGGTTCTTACGGAGATCAAGGAACTCGAA 1164780 Query 23446 CACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCC 23505 || || | ||||| ||||||||||| | |||||| || || |||| ||| ||||| || Sbjct 1164781 GACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTCGCTTGTTGCCACC 1164840 Query 23506 CTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGA 23565 ||| ||||| || || || ||||||||| | || | ||||| || || | |||||| || Sbjct 1164841 CTGGTCGACATAGCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAACACCGTTCGA 1164900 Query 23566 CGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACC 23625 | ||| || || | | || || | || || | ||| |||| | ||| Sbjct 1164901 TGTACCGTTGGTACCGGCGATATAGGAGCCAGTAGCACGGATACGGTGCACGTTCAGACC 1164960 Query 23626 TATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTC 23685 || || || || || || ||||| || || || ||||| |||||||| ||||| Sbjct 1164961 AATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCGTAGATTCCCTC 1165020 Query 23686 GATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGC 23745 || ||||| || || | | |||||||| || || |||| ||| | | || || | Sbjct 1165021 AATACTGTCGTCCTTCATATCAACCAAGAAGCAAGATGACAATTGGGGCTGAGGGGTGCC 1165080 Query 23746 GGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGT 23805 ||| ||| || || || ||| || || ||| || | ||||| || ||||| || Sbjct 1165081 GGCGTTGAAGAGCGTGGGAGAGGCATGTGTGAAGAATTTGCTGGACATCAGGTTGTATGT 1165140 Query 23806 GTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTA 23865 || | | | || || || || || ||||| | | || ||||| ||||||| Sbjct 1165141 CTCCAAGACTCGCTCGATATCATCACCCCAAATACCAACAGACACACGCATGATCATGTG 1165200 Query 23866 TTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTT 23925 ||||| | |||||| | |||| ||| |||| || ||||| || | || || || Sbjct 1165201 CTGAGGGCGCTCGACAATCTTACCGTCAATCTTGAGGAGGTATGATCGCTCCAAAGTCTT 1165260 Query 23926 AAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGAATTCAA 23979 || ||||| || | || | || || || || | || ||||| || | ||| Sbjct 1165261 GAAGCCAAAGTATTGGTATTGGAAATCGCGGTCATAGACAATGGCAGAGTCCAA 1165314 >seq3041 Length=162509 Score = 145 bits (160), Expect = 7e-30 Identities = 463/708 (65%), Gaps = 20/708 (3%) Strand=Plus/Minus Query 57696 GCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAA 57755 || |||||||| || || ||||||||||| |||||||| | ||||| |||| Sbjct 155317 GCTTTTTTCGCTGCCTCTGATGGTATTGTCAACGAGAACCTCGTCGAGCGATTCAGTGGC 155258 Query 57756 GAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTG 57815 || || || | | ||||| | ||||| ||||| || || | || || ||| | Sbjct 155257 GAGGTCCAGATCCCCGAGGCTCGTTGCTTCTACGGCTTCCAGATCATGATGGAGAACATC 155198 Query 57816 CATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGACGAG-AAACG 57874 || || || | || || || ||||| || || ||| | ||||| || | || ||| Sbjct 155197 CACTCCGAGACCTACTCCCTGCTCATTGACACCTACATCAAGGAGCCCGCCCAGCGAACC 155138 Query 57875 TAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGAGTGGTCAAT 57934 || || || ||||| || || || || ||| ||| |||||||| || ||| | || Sbjct 155137 TA-CCTCTTTAACGCCATTGAGACCATCCCCTGCATCCGAAAGAAGGCCGACTGGGCCAT 155079 Query 57935 CAAATGGATAAAAAGCGCCACGG---CCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGC 57991 | |||||| | | | || || | || ||| || | || | || ||||| || Sbjct 155078 CCGATGGATCCA---GGATAAGGACTCCTCCTTTGCCCAGCGTCTCGTTGCTTTCGCTGC 155022 Query 57992 CGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGG 58051 || || ||||| ||||| || ||| || | || || ||| | ||||| || || Sbjct 155021 TGTTGAGGGTATCTTCTTCAGTGGTGCCTTCGCCTCTATCTTCTGGCTCAAGAAGCGTGG 154962 Query 58052 CCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATAC 58111 || |||||||| ||||| || ||||||| | || || || || |||||||| || || Sbjct 154961 TCTCATGCCCGGTCTGACCTTCTCCAACGAGCTCATCTCTCGTGATGAGGGTCTTCACAC 154902 Query 58112 TGATTTTGCGTGCCTAATGTACTCTCAC----ATTGTCAATAAACCGACGCGGGATCGCA 58167 ||| ||||| ||||| | |||||||| | ||| | | | || ||| | Sbjct 154901 TGACTTTGCCTGCCTCCTCCACTCTCACCTCAAGGGTCGTGCCAGC-AAGC-AGAT--GA 154846 Query 58168 TCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCCCTAC 58227 || ||| || || || || || ||| |||| || | ||||| |||| || || || | Sbjct 154845 TCCAGGATATCATTACTGATGCCGTCACGATTGAGCAGGAGTTCCTCACTGAGGCTCTTC 154786 Query 58228 CGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAGTTTGTTGCCG 58287 | ||| | ||||| |||||| ||| | ||| ||||||||||||| || || | Sbjct 154785 CCTGTGCCCTTCTCGGCATGAACTCTGACCTCATGAAGCAGTACATTGAGTTCGTCGCTG 154726 Query 58288 ACAGACTTTTGCTCGAACT--GATTGGAGAGCGTCATTACAACACGAAAAATCCGTTTGA 58345 | | || | ||| || | |||| || |||||| | | || || || || Sbjct 154725 ATCGTCTCCTTGTCGCGCTTGGCAACGAGAAGGT--TTACAAGGCCACCAACCCCTTCGA 154668 Query 58346 TTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGAAAA 58393 || ||| | ||||| || | |||||||| ||||| ||||| || Sbjct 154667 CTTCATGGAGAACATCTCCCTTGGTGGCAAGACCAACTTCTTCGAGAA 154620 >seq102 Length=1299131 Score = 114 bits (126), Expect = 1e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| |||| ||||| || |||||| |||| ||||| | || Sbjct 987277 CATGCAGATCTTCGTCAAGACCTTGACCGGCAAGACCATCACCCTCGAGGTTGAGTCTTC 987336 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| | |||| | ||||| | || ||||||||| ||| | || |||||||| Sbjct 987337 CGACACTATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCCCCCGACCA 987396 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||| || | || ||||| ||||| ||| | || ||| ||| | ||||| || Sbjct 987397 GCAACGCTTGATTTTCGCCGGCAAGCAGCTTGAGGACGGCCGCACTCTCTCTGATTACAA 987456 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 |||||| || || || |||||||| || || || Sbjct 987457 CATTCAGAAGGAGTCCACTCTTCACCTTGTTCT 987489 Score = 102 bits (112), Expect = 7e-17 Identities = 156/221 (71%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| ||||| || |||||||| || || || || |||||| | || || || |||| Sbjct 988016 ATGCAGATTTTTGTGAAGACTCTCACCGGAAAGACCATCACCCTTGAGGTCGA---GTCC 988072 Query 31253 ---GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 |||| | |||| | || || | || ||||||||| || | || || || Sbjct 988073 AGTGACACTATCGACAACGTGAAGAGCAAGATTCAGGACAAGGAGGGTATTCCCCCTGAT 988132 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 || |||||||| || |||||||| || ||||||||||| | || ||||||| || Sbjct 988133 CAACAGCGTCTTATCTTCGCTGGTAAGCAGTTGGAAGATGGTCGCACCTTGAGCGACTAC 988192 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 ||||| || || || || |||||||| || || || |||| Sbjct 988193 AACATCCAGAAGGAGTCAACTCTTCACCTCGTTCTCCGACT 988233 Score = 89.7 bits (98), Expect = 5e-13 Identities = 143/203 (70%), Gaps = 2/203 (1%) Strand=Plus/Plus Query 31203 TCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCG 31262 |||| ||||| || || ||||| || |||||| | || || || ||||||| | ||| Sbjct 987570 TCGTCAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTCGAGTCGTCCGATACCATCG 987629 Query 31263 AAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTA 31321 | | || || || ||| | ||||||||| ||| | || || |||||||||||||| Sbjct 987630 ACAATGTTAAGTCAAAGATTCA-GGACAAGGAGGGCATCCCTCCTGACCAGCAGCGTCTG 987688 Query 31322 ATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAA 31381 || || ||||| || || | ||||| || | ||| || |||||||| || Sbjct 987689 ATCTTTGCTGGAAAGCAACTCGAAGATGGCCGAACCCTTGCCGACTACAACATTCAGAAG 987748 Query 31382 GAATCGACTCTTCATCTGGTACT 31404 ||||| || |||||||| || || Sbjct 987749 GAATCTACCCTTCATCTCGTCCT 987771 >seq579 Length=310369 Score = 107 bits (118), Expect = 2e-18 Identities = 155/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||||| ||||| || || || || ||||||||| | || || || | Sbjct 279433 AAGATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 279374 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 ||||||| |||| | ||||| | || ||||||||| ||| | || || ||| Sbjct 279373 TCCGACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGAC 279314 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTA 31368 |||||||| || || || |||||||| ||| | || || | | | || ||||||| || Sbjct 279313 CAGCAGCGACTCATCTTTGCTGGCAAGCAGCTCGAGGA-TGGACGCACCCTGAGCGACTA 279255 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || || || || || || || ||||| || Sbjct 279254 CAACATCCAGAAGGAGTCCACCCTCCACCTGGTCCT 279219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445746580111440