Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702615 .1_202016-08-10] 3,557 sequences; 56,803,069 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq2893 196 6e-45 seq3041 111 2e-19 >seq2893 Length=1271672 Score = 196 bits (216), Expect = 6e-45 Identities = 595/907 (66%), Gaps = 22/907 (2%) Strand=Plus/Plus Query 71749 ATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTT 71808 |||||||||||||| || || | |||||| || | || | ||| || ||||| Sbjct 1164407 ATAATTTCAGTGCACAGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTTGCTCTTG 1164466 Query 71809 TTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATA 71868 ||| || |||||||| || || || || || | || || ||| |||| | || | | Sbjct 1164467 CGGTTGCAGGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCCTCAAGA 1164526 Query 71869 ATCGCTTTCCAGACGACTC-GAGCCTTTATTATATTCTTGTATCTCTT---TTCTCTTTC 71924 || || | ||| | | || |||||| | ||| ||||| | ||| || | || Sbjct 1164527 ATGGCGTACCA-AAGTTTCTGAGCCT---TGATAGTCTTGCGACCCTTGCCCTCCTTCTC 1164582 Query 71925 GTA--TTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCA-TTGTCTAATCCAGGACA 71981 ||| || ||| | | | |||||||| ||| || |||| | | | | ||||| || Sbjct 1164583 GTACTTTTCGTACAGAGCC--TCGAACTCCTCT-CCGTAGCAGTCGGCGAGGCCAGGGCA 1164639 Query 71982 TTCATTCGGACACATCAATGACCACTCTCCATCATCATTT--ACTCGTTTCATAAAGAGA 72039 || || || ||||||| | ||| || || | || ||| || || ||||| || ||| Sbjct 1164640 CTCGTTGGGGCACATCAGCGTCCAGTCGCCGT--TCTTTTCAACACGCTTCATGAAAAGA 1164697 Query 72040 TCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTC 72099 ||||| |||||||| || | || || || | || | |||||| || || ||| Sbjct 1164698 TCAGGGATCCAAAGGGCGAGGAAAAGGTCACGGGCACGGACCTCCTCTTTACCGTGGTTC 1164757 Query 72100 TTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATA 72159 || ||||| |||||| | | | |||||| ||||| || || | ||| ||||| | | Sbjct 1164758 TTACGGAGATCAAGGAACTCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAA 1164817 Query 72160 ACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTC 72219 | || || || ||||| || ||||| || | || | ||| ||||| || | || | Sbjct 1164818 GCACCGGGTCGCTTGTTGCCACCCTGGTCGACATAGCGAGCAGTGTTGTTGAAGACACGA 1164877 Query 72220 AACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCA 72279 | ||| |||| || ||| || |||| ||| ||||| |||| ||||||| ||| | ||| Sbjct 1164878 AGCATAGGAACAACACCGTTCGATGTACCGTTGGTACCGGCGATATAGGAGCCAGTAGCA 1164937 Query 72280 CGAATA--TTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATC 72337 || ||| ||| || ||||| || || || ||||| || ||||| | || || Sbjct 1164938 CGGATACGGTGCACGTT--CAGACCAATACCACCAGCCATCTTGGAGATCATGGCACAGG 1164995 Query 72338 GTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGC 72397 || | ||||| ||||| ||||| ||||| || ||| |||| | || | || || Sbjct 1164996 TCTTGAGAGTATCGTAGATTCCCTCAATACTGTCGTCCTTCATATCAACCAAGAAGCAAG 1165055 Query 72398 TAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACC 72457 |||| |||| | || || || || || || | || ||||| || || || || Sbjct 1165056 ATGACAATTGGGGCTGAGGGGTGCCGGCGTTGAAGAGCGTGGGAGAGGCATGTGTGAAGA 1165115 Query 72458 ATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTC 72517 |||| |||| || ||||| ||||| | || || ||||| || | Sbjct 1165116 ATTTGCTGGACATCAGGTTGTATGTCTCCAAGACTCGCTCGATATCATCACCCCAAATAC 1165175 Query 72518 CTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCA 72577 | || | |||||||| | ||| |||||||| | || || ||||| | || || | Sbjct 1165176 CAACAGACACACGCATGATCATGTGCTGAGGGCGCTCGACAATCTTACCGTCAATCTTGA 1165235 Query 72578 ACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGT 72637 | ||| ||| |||||||| || || ||||| || | |||| || || || || | Sbjct 1165236 GGAGGTATGATCGCTCCAAAGTCTTGAAGCCAAAGTATTGGTATTGGAAATCGCGGTCAT 1165295 Query 72638 AAATAAT 72644 | | ||| Sbjct 1165296 AGACAAT 1165302 >seq3041 Length=162509 Score = 111 bits (122), Expect = 2e-19 Identities = 549/863 (64%), Gaps = 22/863 (3%) Strand=Plus/Plus Query 41774 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTT 41833 || ||||| || | ||||| || ||||| || || ||||| || | | || || || Sbjct 154599 TTCTGGTAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTC 154658 Query 41834 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGA-AAT 41892 |||||||| || || || ||||| | || |||| || | | |||| || || Sbjct 154659 TCCATGAAGTCGAAGGGGTTGGTGGCCTTGTAAACCTTCTCGT-TGCCAAGCGCGACAAG 154717 Query 41893 CAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 41952 | | ||| |||| ||| || || || ||||| | ||| | ||||| || | ||| Sbjct 154718 GAGACGATCAGCGACGAACTCAATGTACTGCTTCATGAGGTCAGAGTTCATGCCGAGAAG 154777 Query 41953 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAAT 42012 | ||||||||| |||| || || || || ||||| | ||| || || || || || Sbjct 154778 GGCACAGGGAAGAGCCTCAGTGAGGAACTCCTGCTCAATCGTGACGGCATCAGTAATGAT 154837 Query 42013 AGATCTTACTGTTTCTTCA-CTCGGTGGAT--ACAATAAATGTTTAAAC--ATCAAACAT 42067 | | ||| || || || | ||| || | | || | | | || Sbjct 154838 A-----TCCTGGATCATCTGCTTGCTGGCACGACCCTTGAGGTGAGAGTGGAGGAGGCAG 154892 Query 42068 GCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCG 42127 || || || ||| ||||||||||| | | || | |||||||| || || || ||| Sbjct 154893 GCAAAGTCAGTGTGAAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCG 154952 Query 42128 GGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATT 42187 ||||| || |||||||| || ||||| || ||||| || || | ||| |||||||| Sbjct 154953 GGCATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGCACCACTGAAGAAGATA 155012 Query 42188 CCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CACTGTCATGTATC 42244 || || || || || || |||| || | || || | || | | || || ||| Sbjct 155013 CCCTCAACAGCAGCGAAAGCAACGAGACGCTGGGCAAAGGAGGAGTCCTTATCCTGGATC 155072 Query 42245 CA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 42303 || | || ||||| |||||||||||| | || || || || || ||||| ||||| Sbjct 155073 CATCGGATG-GCCCAGTCGGCCTTCTTTCGGATGCAGGGGATGGTCTCAATGGCGTTAAA 155131 Query 42304 GAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTC 42363 ||| ||| || | || || | || || || || | || || | || Sbjct 155132 GAGGTAGGTTCGCTGGGCGGGCTCCTTGATGTAGGTGTCAATGAGCAGGGAGTAGGTCTC 155191 Query 42364 TGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTG 42423 || || ||||| || || ||||| || |||||||| || | ||||||| | ||| Sbjct 155192 GGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAACGAGCCTCGGGGATCTG 155251 Query 42424 TACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAA 42483 || || || ||||| || | | || ||||| || || || ||| ||| || || Sbjct 155252 GACCTCGCCACTGAATCGCTCGACGAGGTTCTCGTTGACAATACCATCAGAGGCAGCGAA 155311 Query 42484 AAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTA---ATTTATTCCAATC 42540 ||| || | | || | || | | || || | || | || ||||| || Sbjct 155312 AAAAGCAAGGATGTGAGAGACGAAGAACTGCTCATCGGCAGTCAGGCGGTTGTTCCAGTC 155371 Query 42541 ATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTT 42600 || || ||| || || | ||| | || || | ||||| || || || || ||||| || Sbjct 155372 ATGGAGATCCTTGGAAAGATCAATCTCCTCAGCAGTCCAGAAGGAAGCCTCAGCCTTCTT 155431 Query 42601 ATACATATTCCAGA--TATCATG 42621 ||||| | ||| | ||||||| Sbjct 155432 GTACATTTGCCAAATCTATCATG 155454 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671109359473320