Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702615 .1_202016-08-10] 3,557 sequences; 56,803,069 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq2893 179 5e-40 >seq2893 Length=1271672 Score = 179 bits (198), Expect = 5e-40 Identities = 573/882 (65%), Gaps = 14/882 (2%) Strand=Plus/Plus Query 62972 GATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAA 63031 ||| || || | || | ||| || ||||| ||| || |||||||| || || ||||| Sbjct 1164436 GATGGTACCGAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAA 1164495 Query 63032 TGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTC-GAGCCTTTA 63090 ||| | || || ||| |||| | || | ||| || | ||| | | || ||||||| | Sbjct 1164496 TGGGTTTCCGGTCTCAGTCTGGGCCTCAAGAATGGCGTACCAAA-GTTTCTGAGCCTTGA 1164554 Query 63091 TTATAGATTTGTATCTCCTTTCTCTT----TCGTATAGTGTATACAATCGTTCGAACTCG 63146 | || ||| | |||| | || ||||| | |||| |||||||| Sbjct 1164555 T---AGTCTTGCGAC-CCTTGCCCTCCTTCTCGTACTTTTCGTACAGAGCCTCGAACTCC 1164610 Query 63147 TCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCG 63206 ||||| | | | | | ||||| || || | || ||||||| || ||| || ||| Sbjct 1164611 TCTCCGTAGCAGTCGGCGAGGCCAGGGCACTCGTTGGGGCACATCAGCGTCCAGTCGCCG 1164670 Query 63207 TCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTG 63266 | | | || || ||||| || |||||||| |||||||| || | || || || | | Sbjct 1164671 TTCTTTTCAACACGCTTCATGAAAAGATCAGGGATCCAAAGGGCGAGGAAAAGGTCACGG 1164730 Query 63267 GTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAA 63326 | | ||||| || || ||||| ||||| |||||| | | | |||||| Sbjct 1164731 GCACGGACCTCCTCTTTACCGTGGTTCTTACGGAGATCAAGGAACTCGAAGACATCAGAG 1164790 Query 63327 TGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATG 63386 ||||| || || | ||| ||||| | | | || || || ||||| || ||||| || | Sbjct 1164791 TGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTCGCTTGTTGCCACCCTGGTCGACA 1164850 Query 63387 TATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTG 63446 || | ||| ||||| || | || | | ||| |||| || |||||| ||| |||| ||| Sbjct 1164851 TAGCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAACACCGTTCGATGTACCGTTG 1164910 Query 63447 GTACCGGAGATATAGCTTCCACTGGCACGAATAT--TACTAATTGATAGACCTATTCCCC 63504 ||||||| ||||||| ||| | ||||| ||| | | || | |||| || || | Sbjct 1164911 GTACCGGCGATATAGGAGCCAGTAGCACGGATACGGTGCACGTTCA--GACCAATACCAC 1164968 Query 63505 CTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTAT 63564 | ||||| || ||||| | || || || | || || ||||| ||||| || || | Sbjct 1164969 CAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCGTAGATTCCCTCAATACTGT 1165028 Query 63565 CATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAA 63624 | || |||| | || | || || |||| |||| | || || || || || | Sbjct 1165029 CGTCCTTCATATCAACCAAGAAGCAAGATGACAATTGGGGCTGAGGGGTGCCGGCGTTGA 1165088 Query 63625 ATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAG 63684 | | || ||||| || || || || |||| || | || ||||| ||||| | Sbjct 1165089 AGAGCGTGGGAGAGGCATGTGTGAAGAATTTGCTGGACATCAGGTTGTATGTCTCCAAGA 1165148 Query 63685 CTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTC 63744 || || ||||| ||| || || | |||||||| | |||||||||||| | Sbjct 1165149 CTCGCTCGATATCATCACCCCAAATACCAACAGACACACGCATGATCATGTGCTGAGGGC 1165208 Query 63745 TTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAA 63804 || || ||||| || || || | | ||| ||| |||||||| || || |||| Sbjct 1165209 GCTCGACAATCTTACCGTCAATCTTGAGGAGGTATGATCGCTCCAAAGTCTTGAAGCCAA 1165268 Query 63805 AATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGT 63846 | || | |||| || || || || || | ||| | |||| Sbjct 1165269 AGTATTGGTATTGGAAATCGCGGTCATAGACAATGGCAGAGT 1165310 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622919502210120