Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702615
.1_202016-08-10] 3,557 sequences; 56,803,069 total letters
Query= NC_009899.1
Length=344691
Score E
Sequences producing significant alignments: (Bits) Value
seq3041 116 8e-21
seq3015 104 5e-17
>seq3041
Length=162509
Score = 116 bits (128), Expect = 8e-21
Identities = 135/182 (74%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 243544 GACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAA 243603
|| ||| |||| || ||| | |||||||||||||| |||||| |||||||| ||
Sbjct 154795 GAGGCTCTTCCCTGTGCCCTTCTCGGCATGAACTCTGACCTCATGAAGCAGTACATTGAG 154736
Query 243604 TTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAAC 243663
||||| || || || | | |||||||||| | ||||| || ||||| ||| |||
Sbjct 154735 TTCGTCGCTGATCGTCTCCTTGTCGCGCTTGGCAACGAGAAGGTTTACAAGGCCACCAAC 154676
Query 243664 CCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGT 243723
||||| | ||| |||||| ||| || ||| || || || ||||||||||| ||||||
Sbjct 154675 CCCTTCGACTTCATGGAGAACATCTCCCTTGGTGGCAAGACCAACTTCTTCGAGAAGCGT 154616
Query 243724 GT 243725
||
Sbjct 154615 GT 154614
>seq3015
Length=715727
Score = 104 bits (114), Expect = 5e-17
Identities = 175/251 (70%), Gaps = 2/251 (1%)
Strand=Plus/Plus
Query 334105 AGTCAATGATAGCCATGTTAGAATCGGACCCGTCGAGATCGTGTTCCACGTAAGCAGTTT 334164
|||||||| | | ||| | || ||||| ||| || ||||| || ||| | |||| |
Sbjct 337577 AGTCAATGGTGGTCATCTCAGTATCGGCGGAGTCAAGGTCGTGCTCGACGAAGACAGTCT 337636
Query 334165 TCAAAACA-TCCGCAGAGGGGAACCCTTCAAGCTGACCGTTCACAATAGCGCGCATCAGA 334223
| | | || || |||| |||||| ||| ||| |||| || |||||||| |||
Sbjct 337637 TGACCTCGCTCTGCTTAGGGAAACCCT-CAACCTGCTCGTTGTTGATGGCGCGCATGAGA 337695
Query 334224 GTTGATTTACCCGCCCCGTTTGGCCCACACAGACCGTAGCGGTTTCCACGCTTCAGATTG 334283
|| || || || | ||||| || || || |||||||| || | |||||||| ||| |
Sbjct 337696 GTGGACTTTCCGGAACCGTTGGGACCGCAAAGACCGTAACGCTGACCACGCTTGAGACGG 337755
Query 334284 AACCGCGTATTGTTCAGAAGAATTTTTCCACCATATGCCAGAGAAAATTCACAATCACAC 334343
| | || | ||| |||||||| || |||| || || ||||| || ||| | ||
Sbjct 337756 AGGTGAGTCTGGTTGAGAAGAATCTTGGCACCGTAGGCAAGAGAGAAGGTACAGTTGCAA 337815
Query 334344 AGATCCTCACC 334354
|||||||||||
Sbjct 337816 AGATCCTCACC 337826
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1102829737277950
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |