Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702615
.1_202016-08-10] 3,557 sequences; 56,803,069 total letters
Query= NC_010276.1
Length=156179
Score E
Sequences producing significant alignments: (Bits) Value
seq102 116 4e-21
>seq102
Length=1299131
Score = 116 bits (128), Expect = 4e-21
Identities = 153/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291
|| || || |||| || || || || |||||||||||||| | || ||||| ||||
Sbjct 987489 AGAACAAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGAGAGAGTGCGGCCGTCC 987430
Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351
||||||||||||||||| |||| | || ||||||||||| ||||| || || || ||
Sbjct 987429 TCAAGCTGCTTGCCGGCGAAAATCAAGCGTTGCTGGTCGGGGGGAATGCCCTCCTTGTCC 987370
Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411
|| || || ||| ||| || | || || | || || || | || | ||||
Sbjct 987369 TGAATCTTGGACTTGACATTGTCGATAGTGTCGGAAGACTCAACCTCGAGGGTGATGGTC 987310
Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
||||||||||| || || ||||| || |||||
Sbjct 987309 TTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 987278
Score = 98.7 bits (108), Expect = 1e-15
Identities = 140/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306
|| ||||| || ||||||||||| || | | || || | |||||||| ||||||||
Sbjct 987984 GTAGATTCCTTCTGAATGTTGTAGTCGGAAAGAGTTCGGCCATCTTCAAGTTGCTTGCCA 987925
Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366
|| | ||||| ||||| || ||||||||||| || || || || || || || |||
Sbjct 987924 GCGAAGATGAGTCGCTGTTGATCGGGAGGAATACCCTCCTTGTCCTGGATCTTGCTCTTC 987865
Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426
||| || | ||||| | || ||||| | ||| | |||||| || || | ||
Sbjct 987864 ACATTATCAATGGTATCGGATGACTCGACTTCCAGAGTAATGGTCTTTCCAGTGAGGGTC 987805
Query 64427 TTTACGAAAATTTGCAT 64443
|| ||||| ||||||||
Sbjct 987804 TTGACGAAGATTTGCAT 987788
Score = 95.1 bits (104), Expect = 1e-14
Identities = 142/202 (70%), Gaps = 0/202 (0%)
Strand=Plus/Minus
Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291
|| || ||||||| || ||||| || ||||||||||| || || | ||| || | |||
Sbjct 987771 AGGACGAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCGGCAAGGGTTCGGCCATCT 987712
Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351
|| || ||||| || ||| | || || ||||||||||| ||||| || || || || ||
Sbjct 987711 TCGAGTTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCC 987652
Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411
|| || ||| ||| ||| || | ||||| | || || || | || | ||||
Sbjct 987651 TGAATCTTTGACTTAACATTGTCGATGGTATCGGACGACTCGACCTCAAGGGTGATGGTC 987592
Query 64412 TTGCCGGTCAAAGTTTTTACGA 64433
||||| || | || || ||||
Sbjct 987591 TTGCCAGTGAGGGTCTTGACGA 987570
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 499622584543080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |