Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702615
.1_202016-08-10] 3,557 sequences; 56,803,069 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq3041 196 6e-45
seq2893 159 4e-34
>seq3041
Length=162509
Score = 196 bits (216), Expect = 6e-45
Identities = 539/817 (66%), Gaps = 23/817 (3%)
Strand=Plus/Plus
Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290
|||||| | || ||||||||||||||||| ||||| ||| | ||| ||| ||||||||
Sbjct 154604 GTAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTCTCCAT 154663
Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAA-----TTGTTGGCACCCCAATCTGTTTGAGG 127345
|| || || ||||| | | || ||| | |||| |||| | |||
Sbjct 154664 GAAGTCGAAGGGGTTGGTGGCCTTGTAAACCTTCTCGTTG-----CCAAGCGCGACAAGG 154718
Query 127346 AGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGG 127405
|||||||| | |||| |||||||||||| ||| ||||||||||| |||| |||
Sbjct 154719 AGACGATCAGCGACGAACTCAATGTACTGCTTCATGAGGTCAGAGTTCATGCCGAGAAGG 154778
Query 127406 TTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATG 127465
||| || || || || || |||| ||| |||||| || || || | |||
Sbjct 154779 GCACAGGGAAGAGCCTCAGTGAGGAACTCCTGCTCAATCGTGACGGCATCAGTAATGATA 154838
Query 127466 GCGTGAATAGTGTCCACCC---CAGGTCTATTGCGTAAAGTCTTGAAGAGTTCCACAGCA 127522
| || || | | | | || | | ||| | || | || ||| || |||
Sbjct 154839 TCCTGGATCATCTGCTTGCTGGCACGACCCTTGAGGTGAGAGTGGAGGAGG--CAG-GCA 154895
Query 127523 AACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGC 127582
|| || ||| |||||||| ||||| |||||||| || || |||||| |||||| |||
Sbjct 154896 AAGTCAGTGTGAAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCGGGC 154955
Query 127583 ATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCC 127642
|||||||| |||||||| | |||||| || | || | ||| ||||||||| |||
Sbjct 154956 ATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGCACCACTGAAGAAGATACCC 155015
Query 127643 TCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCAC 127702
|| ||| ||||| |||| ||||||| |||||||||| | ||| | | |||
Sbjct 155016 TCAACAGCAGCGAAAGCAACGAGACGCTGGGCAAAGGAGGAGTCCTTATCCTGGATCCAT 155075
Query 127703 TTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGT 127762
|| ||||| | ||||| || ||| || |||| ||||| || || | ||||||
Sbjct 155076 CGGATGGCCCAGTCGGCCTTCTTTCGGATGCAGGGGATGGTCTCAATGGCGTTAAAGAGG 155135
Query 127763 TCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCG 127822
| | | | || || |||||||| | || ||||| || || || ||| |
Sbjct 155136 TAGGTTCGCTGGGCGGGCTCCTTGATGTAGGTGTCAATGAGCAGGGAGTAGGTCTCGGAG 155195
Query 127823 TGGACCAT-TTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTAC 127881
|||| | | ||| || | ||| | ||||||| | || || ||| ||||| ||
Sbjct 155196 TGGATGTTCTCCATCAT-GATCTGGAAGCCGTAGAAGCAACGAGCCTCGGGGATCTGGAC 155254
Query 127882 CTCATCGGCAAAATTG-TTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAA 127940
||| | | ||| | | || ||||| ||||| ||||| || |||| ||||
Sbjct 155255 CTC-GCCACTGAATCGCTCGACGAGGTTCTCGTTGACAATACCATCAGAGGCAGCGAAAA 155313
Query 127941 ACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTTCCAGTCGT 127997
| || ||||| | | ||| ||| |||| | ||| || | |||||||| |
Sbjct 155314 AAGCAAGGATGTGAGAGACGAAGAACTGCTCATCGGCAGTCAGGCGGTTGTTCCAGTCAT 155373
Query 127998 CGAGATCCTTTGAGAGATCTACCTCCTCCGCAGTCCA 128034
||||||||| || ||||| | |||||| ||||||||
Sbjct 155374 GGAGATCCTTGGAAAGATCAATCTCCTCAGCAGTCCA 155410
>seq2893
Length=1271672
Score = 159 bits (176), Expect = 4e-34
Identities = 1164/1848 (63%), Gaps = 55/1848 (3%)
Strand=Plus/Plus
Query 115526 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 115585
|||||||||| || || |||| || || ||||||||||| || |||||||| |
Sbjct 1163451 TGAACTGAATAGGAGCAGCAGCAGCCTGTGTACGAAGGTAGTACATGCCAGTCTTGAGGC 1163510
Query 115586 CCTGCTTCCAGGCATACATA-TGCATTGAGGACAACTTGGAGAGTGTTGGACTTTCCATG 115644
| |||||||| | | || | ||||| || | |||| | || || || ||||
Sbjct 1163511 CAAGCTTCCAGCC-TGCAAAGTGCATACTGGTGATCTTGCCCATCGTGGGGTCTTTCATG 1163569
Query 115645 AAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATC 115704
|| ||||| ||||| ||||| |||||| || ||||| || ||||| | ||
Sbjct 1163570 TGGATGTTCAGTGACTGGGACTGATCAATGAAGGCACCTCGATCAGCAGCCATCTGAACG 1163629
Query 115705 ACATCCTTCATCTTGATTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGGATA 115764
|| | | ||| ||||| || || | || || ||| | ||| | |||||
Sbjct 1163630 ACTTGGCGCTGAGAGATCTCCCAAACGGTCTTATACAGAGCCTTGACATCGGCAGGGATG 1163689
Query 115765 TCCACGATATTTTGGATAGAGCCAC---CTGCCTTGACCATGAGATCCTTCATATCCTTT 115821
| || || || || || ||| | || ||| || | | ||||||| | |
Sbjct 1163690 TTGGGAATGTTCTGAATGGAACCATTCTCAGCAATGA---TGCGGTTCTTCATAGCATCG 1163746
Query 115822 GACCAGAGACCAATCTTCTTGAGATCCTCCA----CGAGGTGCTTATTGACAACAACAAA 115877
||||| ||||| || | || |||| | | ||| | |||||||| ||
Sbjct 1163747 GACCACAGACCCATGTCGACAAGGTCCTTGAGCAGCCAGGGG----TTGACAACCTGGAA 1163802
Query 115878 CTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTATGGCTCAAAGCACTCATT 115937
|||||| ||||| |||| | |||||||||| ||||| ||||| |||||||| ||
Sbjct 1163803 CTCACCAGCGAGAACACGTCGTTGGTAGATGTTGGAGGTGTAGGGCTCGAAGCACTCGTT 1163862
Query 115938 GTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCG 115997
||| |||| || |||| || ||| || ||||| || || | ||| || ||||| ||
Sbjct 1163863 GTTGCCCAGAATCTGGGAGGTACTGGCAGTAGGCATAGGAGCAAGGAGCAGACTGTTACG 1163922
Query 115998 GAGACCCACCCCCCTAATGCGTTC-CTTGAGG-GCGTCCCAGTCGTAGTTGAGCTTTGTC 116055
|| || | | | | | | || || | | |||||||| || | | |
Sbjct 1163923 GATGCCGTGTGTCTTGA--CTTCCTCTCGAAGAGTCTCCCAGTCCCAGAGGTCAGAGGGC 1163980
Query 116056 TCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTC 116115
| | | |||||| || |||||||||||||| | || || || || || | || ||
Sbjct 1163981 TTGACGTTCCACATGTCGAACTGGAGGATACCCTCAGAGGCGGGGGAACCTTTGAAGGTG 1164040
Query 116116 TCATATGGGCCCTCAACCTCCGCCAATT---CGGAGCTCGCCTCGAGGGCTGCGTGATAC 116172
|| || ||||| ||| |||| | ||||| || |||||| ||||| ||
Sbjct 1164041 GAGTAGGGACCCTCCTCCTTAGCCAGCTGCACGGAG---GCAGTGAGGGCAGCGTGGTAA 1164097
Query 116173 ATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGG 116232
|| ||||| || || | || | | |||||| || || || | | ||
Sbjct 1164098 ATGGTCTCGAAGATCTGCTTGTTGAGCTCACGAGCCTCGGGTGACTCGAAGGGCATGCG- 1164156
Query 116233 CACAA-AATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCAT 116291
|| | || || |||| || || || || ||||| || ||||| || || || | |||
Sbjct 1164157 CAGAGCAAGGAAAGCATCGGCAAGGCCCTGAACACCAAGACCAATGGGTCGGTGGCGCAT 1164216
Query 116292 ATTAGACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATT 116351
||| || ||||| || || || || ||| |||||| | | | || || ||
Sbjct 1164217 GTTACTGTTGCGAGCCTCCTGGACAGGGTAGTGGTTCACATCGATGATCTTGTTCAGGTT 1164276
Query 116352 TTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTC 116411
| ||||||| ||| | || | ||| | | | || | || || ||| ||
Sbjct 1164277 GCGAATAACAACCTGACTGACCTTGTGCAACTTCTTGAAGTCGTA---GCAAGCCTCATC 1164333
Query 116412 AT---TGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTT 116468
| ||| | || || || | || || || || || |||| | ||| ||
Sbjct 1164334 GTAGTTGATGAAAGAGGGCAGAGCCAGAGAGGCAAGGTTGCAGACAGCGACCTCGTCAGG 1164393
Query 116469 ATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTT 116528
|| |||||| |||||||| || |||| || || || ||||| || | ||||||
Sbjct 1164394 GGCACAGTACTCAATAATTTCAGTGCACAGGTTGGAGCTTCGGATGGTACCGAGGTTCTT 1164453
Query 116529 TTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGT 116588
||| || ||| ||| || ||||||||||||||||| |||| | || ||||| ||
Sbjct 1164454 TTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCAGT 1164513
Query 116589 TTGGGACTTGAGAATAGCCTTCCATA-CATCGGCGGCTGGCACAG--TGGCGTTGGCTCG 116645
|||| || ||||| || | ||| | || | | || | | || | ||| || |
Sbjct 1164514 CTGGGCCTCAAGAATGGCGTACCAAAGTTTCTGAGCCTTG-ATAGTCTTGCG-ACCCTTG 1164571
Query 116646 CCCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGC-CTCTGAGA 116704
||||||| |||||||||| ||| || ||||| ||||| || || ||| || | ||
Sbjct 1164572 -CCCTCCTTCTCGTACTTTTCGTACAGAGCCTCGAACTCCTC-TCCGTAGCAGTCGGCGA 1164629
Query 116705 GCCCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCA 116764
| || || || | || || | || | ||| | || || ||||| |||||||
Sbjct 1164630 GGCCAGGGCACTCGTTGGGGCACATCAGCGTCCAGTCGCCGTTCTTTTCAACACGCTTCA 1164689
Query 116765 TGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCC 116824
|||| || || |||||||| || || ||| || || || || | || || | |
Sbjct 1164690 TGAAAAGATCAGGGATCCAAAGGGCGAGGAAAAGGTCACGGGCACGGACCTCCTCTTTAC 1164749
Query 116825 CCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACA 116884
| || || ||| | || | || || | || ||| | |||||| || || ||||| |
Sbjct 1164750 CGTGGTTCTTACGGAGATCAAGGAACTCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGA 1164809
Query 116885 CCGCGATTG-ACC-CCTTGC--GACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTA 116940
|| | | ||| | || | | ||| |||||| ||||| | || || |||
Sbjct 1164810 TGGCAAAAGCACCGGGTCGCTTGTTG-CCACCCTGGTCGACATAGCGAGCAGTGTTGTTG 1164868
Query 116941 AATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGT-CCCCCGA-ATACGAG 116998
|| || |||||||| |||| | ||| | ||| || || || || ||| ||| |||
Sbjct 1164869 AAGACACGAAGCATAGGAACAACACCGTTCGATGTACCGTTGGTACCGGCGATATAGGAG 1164928
Query 116999 ACTTGTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTT 117058
| | || | || | ||| | || || ||||||||| || ||| ||| |||||
Sbjct 1164929 CC--AGTAGCACGGATACGGTGCACGTTCAGACCAATACCACCAGCCATCTTGGAGATCA 1164986
Query 117059 GTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGA 117118
|| || | ||||| | ||||||| || || || ||| |||| | | | |
Sbjct 1164987 TGGCACAGGTCTTGAGAGTATCGTAGATTCCCTCAATACTGTCGTCCTTCATATCAACCA 1165046
Query 117119 GGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGT 117178
|||||| |||| ||| ||| || || || ||||||||||| || || | || |
Sbjct 1165047 AGAAGCAAGATGACAATTGGGGCTGAGGGGTGCCGGCGTTGAAGAGCGTGGGAGAGGCAT 1165106
Query 117179 GGATGAACA--TACCTTGGGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTC 117236
| |||| | | || ||||||| | ||| ||||||||||| || || ||
Sbjct 1165107 GTGTGAAGAATTTGCT--GGACATCAGGTTGTATGTCTCCAAGACTCGCTCGATATCATC 1165164
Query 117237 CCCGTGAATACCGATTGAGACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACC 117296
|| |||||| | || || ||||| | ||||| || || || | | ||||
Sbjct 1165165 ACCCCAAATACCAACAGACACACGCATGATCATGTGCTGAGGGCGCTCGACAATCTTACC 1165224
Query 117297 ATCGAGCCTCTGGAGGTAACTCTTCTCCAAGGTCTTGAGACCAAAATA 117344
|| | | | ||||||| |||||| ||||||| ||||| ||
Sbjct 1165225 GTCAATCTTGAGGAGGTATGATCGCTCCAAAGTCTTGAAGCCAAAGTA 1165272
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 613479921936120
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