Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702615
.1_202016-08-10] 3,557 sequences; 56,803,069 total letters
Query= NC_014766.1
Length=194022
Score E
Sequences producing significant alignments: (Bits) Value
seq2893 237 2e-57
seq3041 147 3e-30
>seq2893
Length=1271672
Score = 237 bits (262), Expect = 2e-57
Identities = 1135/1782 (64%), Gaps = 39/1782 (2%)
Strand=Plus/Minus
Query 111611 CCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGT 111670
||| ||| ||||| ||||||| || | | ||||| || || ||||| || ||
Sbjct 1165207 CCCTCAGCACATGATCATGCGTGTGTCTGTTGGTATTTGGGGTGATGATATCGAGCGAGT 1165148
Query 111671 TTTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTT 111730
|||||||||||| || ||||||| | | |||| || || | || || |||||
Sbjct 1165147 CTTGGAGACATACAACCTGATGTCCAGCAAATTCTTCACACATGCCTCTCCCACGCTCTT 1165088
Query 111731 CAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGA 111790
|||||| || || || |||||| |||| ||| ||| | ||| | ||||| ||
Sbjct 1165087 CAACGCCGGCACCCCTCAGCCCCAATTGTCATCTTGCTTCTTGGTTGATATGAAGGACGA 1165028
Query 111791 TTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGG 111850
|| | || || |||| ||||||| |||||| ||||| ||| ||||||
Sbjct 1165027 CAGTATTGAGGGAATCTACGATACTCTCAAGACCTGTGCCATGATCTCCAAGATGGCTGG 1164968
Query 111851 TGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTAT-TAGA-GGTACA 111908
|||||| || || || | || | || | || | | ||| ||| | | |||||
Sbjct 1164967 TGGTATTGGTCTGAACGTGCACCGTATCCGTGCTACT--GGCTCCTATATCGCCGGTACC 1164910
Query 111909 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 111968
|| ||| ||| | ||| || |||| |||||||| || || ||| ||| || ||||||
Sbjct 1164909 AACGGTACATCGAACGGTGTTGTTCCTATGCTTCGTGTCTTCAACAACACTGCTCGCTAT 1164850
Query 111969 GTAAACCAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGG 112022
|| |||| | ||| ||| | | || || | || |||| || ||||| |||
Sbjct 1164849 GTCGACCAGGGTGGCAACAAGCGACCC---GGTGCTTTTGCCATCTACCTCGAGCCTTGG 1164793
Query 112023 CACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGG 112082
||| | ||| || | ||||||||||| | ||| ||||| ||| | ||||||| ||
Sbjct 1164792 CACTCTGATGTCTTCGAGTTCCTTGATCTCCGTAAGAACCACGGTAAAGAGGAGGTCCGT 1164733
Query 112083 TGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAG 112142
||| || || ||| ||| || ||||| || ||||| ||||||||| | ||||| ||
Sbjct 1164732 GCCCGTGACCTTTTCCTCGCCCTTTGGATCCCTGATCTTTTCATGAAGCGTGTTGAAAAG 1164673
Query 112143 AGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGT 112202
| ||| | ||| | || | || || || || || || ||| |||| | ||
Sbjct 1164672 AACGGCGACTGGACGCTGATGTGCCCCAACGAGTGCCCTGGCCTCGCCGACTGCTACGGA 1164613
Query 112203 GAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGC--GACGG 112260
|||||||| || || || ||| ||||||||| |||| | | | | | | || |||
Sbjct 1164612 GAGGAGTTCGAGGCTCTGTACGAAAAGTACGA-GAAGGAGGGCAAGGGTC-GCAAGACTA 1164555
Query 112261 TGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCAT 112320
| ||| | | ||| | || ||||| || | || || ||||| || | ||||
Sbjct 1164554 TCAAGGCTCAGAAACTTTGGTACGCCATTCTTGAGGCCCAGACTGAGACCGGAAACCCAT 1164495
Query 112321 ATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCA 112380
||||| ||||| || ||||| |||| ||||| || |||||||| | ||| |||
Sbjct 1164494 TCATGCTCTACAAGGATGCCTGCAACCGCAAGAGCAACCAAAAGAACCTCGGTACCATCC 1164435
Query 112381 AGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGT 112440
|| |||||||| || || ||||| | || | | | || ||| ||||| |
Sbjct 1164434 GAAGCTCCAACCTGTGCACTGAAATTATTGAGTACTGTGCCCCTGACGAGGTCGCTGTCT 1164375
Query 112441 GTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTT---- 112496
| ||||| || || | ||||| ||| | | | || || || | || ||
Sbjct 1164374 GCAACCTTGCCTCTCTGGCTCTGCCC---TCT-TTCAT-CAACTACGATGAGGCTTGCTA 1164320
Query 112497 -GATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTAT 112555
|| | | || | ||| | || | | ||| | ||||| |||| | ||
Sbjct 1164319 CGACTTCAAGAAGTTGCACAAGGTCAGTCAGGTTGTTATTCGCAACCTGAACAAGATCAT 1164260
Query 112556 TGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAAT 112615
||| || ||||| || || ||||| || ||| ||| | ||||| || ||
Sbjct 1164259 CGATGTGAACCACTACCCTGTCCAGGAGGCTCGCAACAGTAACATGCGCCACCGACCCAT 1164200
Query 112616 TGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATT-CTTTGTCGCCACGCATTTGATT 112674
|||||| ||||| || || || || |||| ||| || || || ||| | || || |
Sbjct 1164199 TGGTCTTGGTGTTCAGGGCCTTGCCGATGCTTTCCTTGCTCTG-CGCATGCCCTTCGAGT 1164141
Query 112675 CCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTG 112734
| ||| || || |||| || || || ||||| || || ||||| || ||
Sbjct 1164140 CACCCGAGGCTCGTGAGCTCAACAAGCAGATCTTCGAGACCATTTACCACGCTGCCCTCA 1164081
Query 112735 AGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAG 112794
|| | || |||| ||| || ||||| || ||||| | ||||| || |
Sbjct 1164080 CTGCCTCCGTGCAGCTGGCTAAGGAGGAGGGTCCCTACTCCACCTTCAAAGGTTCCCCCG 1164021
Query 112795 CTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACTACGACT 112854
| || | || | || || || || |||||| | | || || | || ||||
Sbjct 1164020 CCTCTGAGGGTATCCTCCAGTTCGACATGTGGAACGTCAAGCCCTCTGACCTCTGGGACT 1163961
Query 112855 GGGACGCTC-TCAAG-GAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGC 112912
|||| ||| || || | | | ||||| | || | ||||||||||| | | ||
Sbjct 1163960 GGGAGACTCTTCGAGAGGAAG--TCAAGACACACGGCATCCGTAACAGTCTGCTCCTTGC 1163903
Query 112913 ACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTA 112972
|| ||||| || ||| ||| | || || |||| || || || ||||| || |||||
Sbjct 1163902 TCCTATGCCTACTGCCAGTACCTCCCAGATTCTGGGCAACAACGAGTGCTTCGAGCCCTA 1163843
Query 112973 CACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCA 113032
||| | |||||||| | || | ||||| || ||||| | ||||||||
Sbjct 1163842 CACCTCCAACATCTACCAACGACGTGTTCTCGCTGGTGAGTTCCAGGTTGTCAACCCCTG 1163783
Query 113033 TCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCATGGT 113092
|| | | ||||| || || ||||| |||||| | | ||||||| | | ||| |
Sbjct 1163782 GCTGCTCAAGGACCTTGTCGACATGGGTCTGTGGTCCGATGCTATGAAGAACCGCATCAT 1163723
Query 113093 GAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAGATGAAATTAAGAAGTTGTA 113152
| | |||||||||||| || ||| | || || | || | ||| ||||
Sbjct 1163722 TGCTGAGAATGGTTCCATTCAGAACATTCCCAACATCCCTGCCGATGTCAAGGCTCTGTA 1163663
Query 113153 CCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATTGACATGGCCGCAGATCGTGGTCG 113212
|| |||||||| ||| | | ||| || | ||||| || ||||| |||
Sbjct 1163662 TAAGACCGTTTGGGAGATCTCTCAGCGCCAAGTCGTTCAGATGGCTGCTGATCGAGGTGC 1163603
Query 113213 CTTCATTGATCAAAGTCAAAGT--ATGAATCTATTCATGGAAAGTCCAACGATGTCCAAG 113270
||||||||||| |||| ||| |||| | |||| || || |||||| ||||
Sbjct 1163602 CTTCATTGATC--AGTCCCAGTCACTGAACATCCACATGAAAGACCCCACGATGGGCAAG 1163545
Query 113271 CTCTCTTCTATGCACATGTACA-GTTGGAAGAAGGGTCTCAAAACGGGGATGTATTACCT 113329
|| | ||||||| | | || | |||||| || ||||| || || ||||| |||||
Sbjct 1163544 ATCACCAGTATGCAC-TTTGCAGGCTGGAAGCTTGGCCTCAAGACTGGCATGTACTACCT 1163486
Query 113330 CCGATCTAAGGCAAAGGCGCGCCCAATTCAGTTCAGTCTTGA 113371
|| | |||| || || |||||||||| | ||||
Sbjct 1163485 TCGTACACAGGCTGCTGCTGCTCCTATTCAGTTCACTGTTGA 1163444
>seq3041
Length=162509
Score = 147 bits (162), Expect = 3e-30
Identities = 180/243 (74%), Gaps = 2/243 (1%)
Strand=Plus/Minus
Query 102090 CTCTTTGAAGCCATCCAAACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAG 102149
|||||| | ||||| | || | || || || | |||||| || || ||||| ||
Sbjct 155134 CTCTTTAACGCCATTGAGACCATCCCCTGCATCCGAAAGAAGGCCGACTGGGCCATCCGA 155075
Query 102150 TGGTTTGAT-ACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGA 102208
||| | | | || | | | | ||||||| |||| ||| | || || || ||||||
Sbjct 155074 TGGATCCAGGATAAGGACTCCT-CCTTTGCCCAGCGTCTCGTTGCTTTCGCTGCTGTTGA 155016
Query 102209 GGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCAT 102268
||||||||||||| |||| ||||| | |||| | |||||||||||||| ||||||||
Sbjct 155015 GGGTATCTTCTTCAGTGGTGCCTTCGCCTCTATCTTCTGGCTCAAGAAGCGTGGTCTCAT 154956
Query 102269 GCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTT 102328
||| ||||| ||||||||||||||| ||||||||||| ||||| || ||| || ||
Sbjct 154955 GCCCGGTCTGACCTTCTCCAACGAGCTCATCTCTCGTGATGAGGGTCTTCACACTGACTT 154896
Query 102329 TGC 102331
|||
Sbjct 154895 TGC 154893
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 620714800241040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |