Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702615
.1_202016-08-10] 3,557 sequences; 56,803,069 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq2893 244 1e-59
seq944 104 3e-17
seq3041 86.0 7e-12
seq1887 86.0 7e-12
>seq2893
Length=1271672
Score = 244 bits (270), Expect = 1e-59
Identities = 1026/1599 (64%), Gaps = 57/1599 (4%)
Strand=Plus/Plus
Query 109500 GTTCATCGACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGTCGATGATACA 109559
||||| ||||| |||||||| ||||| ||| |||||||| ||||| | | ||
Sbjct 1163575 GTTCAGTGACTGGGACTGATCAATGAAGGCACCTCGATCAGCAGCCATCTGAACGA---- 1163630
Query 109560 CTTTTGGCTAA----TTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGT 109615
||| ||| | | ||||| || ||||| |||| | ||||| ||| | || ||||
Sbjct 1163631 CTTGGCGCTGAGAGATCTCCCAAACGGTCTTATACAGAGCCTTGACATCGGCAGGGATGT 1163690
Query 109616 CCACGATGTTTTGAATAGAGCCAC---CAGCCTTCACCATGAGATCCTTCATCTCTTTCG 109672
||||| ||||| || ||| |||| | | || | | |||||| | | |
Sbjct 1163691 TGGGAATGTTCTGAATGGAACCATTCTCAGCAATGA---TGCGGTTCTTCATAGCATCGG 1163747
Query 109673 ACCAGAGACCGACCTTTTTGAGATCGTCAACAAGATGCTTG---TTGACCACGACAAATT 109729
|||| ||||| | | | || | ||| || || | ||||| || || |
Sbjct 1163748 ACCACAGACCCA---TGTCGACAAGGTCCTTGAGCAGCCAGGGGTTGACAACCTGGAACT 1163804
Query 109730 CACCAGCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGT 109789
||||||| || ||||| |||||||||| | |||||||| ||||| ||||| ||||
Sbjct 1163805 CACCAGCGAGAACACGTCGTTGGTAGATGTTGGAGGTGTAGGGCTCGAAGCACTCGTTGT 1163864
Query 109790 TGCCTAGGATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGA 109849
|||| || || || | || || || ||||| ||||| | ||| |||||||| ||||
Sbjct 1163865 TGCCCAGAATCTGGGAGGTACTGGCAGTAGGCATAGGAGCAAGGAGCAGACTGTTACGGA 1163924
Query 109850 GACCCTTCGTCTTTACCCGCTCACGCATTGCGTCCCAATCATAACGACCACTAAATTTAG 109909
|| | ||||| || ||| || | | ||||| || | | || |
Sbjct 1163925 TGCCGTGTGTCTTGACTTCCTCTCGAAGAGTCTCCCAGTCCCAGAGGTCAGAG------G 1163978
Query 109910 TCTCACCATCCCACATATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAAC 109969
|| | | |||||| || || || | |||||||| || || ||||| |||||
Sbjct 1163979 GCTTGACGTTCCACATGTCGAACTGGAGGATACCCTCAGAGGCGGGGGAACCTTTGAAGG 1164038
Query 109970 TCTCGTACGACCCCTCAACCTCGGCCAACTCGGATGAAGCCTCT-AGTGCCGCATGATAC 110028
| ||| | ||||| ||| |||| || | | | || | | || || || || ||
Sbjct 1164039 TGGAGTAGGGACCCTCCTCCTTAGCCAGCT-GCACGGAGGCAGTGAGGGCAGCGTGGTAA 1164097
Query 110029 ATAGTCTCAAAAATATGAGCATTCATGAGG---CGAGACTCTTCACAGTCGAAGGGAAGA 110085
|| ||||| || || || || |||| |||| ||| | |||||||| |
Sbjct 1164098 ATGGTCTCGAAGATCTGC---TTGTTGAGCTCACGAGCCTCGGGTGACTCGAAGGGCATG 1164154
Query 110086 CCACAAAG-AATAAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTT 110144
| || || || || |||| || || ||||||||||| ||||||||||| || ||
Sbjct 1164155 CG-CAGAGCAAGGAAAGCATCGGCAAGGCCCTGAACACCAAGACCAATGGGTCGGTGGCG 1164213
Query 110145 CATGTTAGAGCGTCGAGCAGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAG 110204
||||||| | ||||| | || ||||| ||| ||||||| | || ||
Sbjct 1164214 CATGTTACTGTTGCGAGCCTCCTGGACAGGGTAGTGGTTCACATCGATGATCTTGTTCAG 1164273
Query 110205 ATTCTTCGTCACAGTCTTCGTGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTC 110264
|| | ||| || ||| | || | || | | | ||| | | | ||
Sbjct 1164274 GTTGCGAATAACAACCTGACTGACCTTGTGCAACTTCTTGAAGTCGTA-GCAAGCCTCAT 1164332
Query 110265 CTTA-TTGACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTT 110323
| || |||| | ||| ||||| | ||| ||||| ||||| |||| ||||||
Sbjct 1164333 CGTAGTTGATGAAAGAGGGCAGAGCCAGAGAGGCAAGGTTGCAGACAGCGACCTCGTCAG 1164392
Query 110324 TGTCGGTGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCT 110383
| | ||| || | |||||| || |||| |||||| || ||| ||| | |||||
Sbjct 1164393 GGGCACAGTACTCAATAATTTCAGTGCACAGGTTGGAGCTTCGGATGGTACCGAGGTTCT 1164452
Query 110384 TCTGATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCG 110443
| || || ||| |||||| |||||||| ||||||||| ||||| | || || || |
Sbjct 1164453 TTTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCAG 1164512
Query 110444 TCTGTGACTTGAGAATGGCCTTCCATACATCGGCGGCGGGGACAGT--TGCGTTAGCGAG 110501
|||| | || |||||||| | ||| | | || || ||| |||| | |
Sbjct 1164513 TCTGGGCCTCAAGAATGGCGTACCAAAGTTTCTGAGCCTTGATAGTCTTGCG--ACCCTT 1164570
Query 110502 ACCTTCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAG 110561
|| |||| ||||||||| ||||| |||| || |||| |||||| || | ||
Sbjct 1164571 GCCCTCCTTCTCGTACTTTTCGTACAGAGCCTCGAACTCCTCTCCGTAGCAGTCGGCGAG 1164630
Query 110562 ACCCTTCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCAT 110621
|| || || ||| || | || | ||| | || || ||||| | ||||||
Sbjct 1164631 GCCAGGGCACTCGTTGGGGCACATCAGCGTCCAGTCGCCGTTCTTTTCAACACGCTTCAT 1164690
Query 110622 GAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACC 110681
||| || ||||| ||||| | || ||||||||||||| ||| |||| || | |||
Sbjct 1164691 GAAAAGATCAGGGATCCAAAGGGCGAGGAAAAGGTCACGGGCACGGACCTCCTCTTTACC 1164750
Query 110682 TTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAG-- 110739
||||| || || || | || || | || ||| |||||||| || ||||| |||
Sbjct 1164751 GTGGTTCTTACGGAGATCAAGGAACTCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGAT 1164810
Query 110740 ----ACAGCGATGGATCCCTTACGACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATT 110795
| ||| || || ||| | | || |||||| |||||||| || ||| ||
Sbjct 1164811 GGCAAAAGCACCGGGTCGCTT--GTTG-CCACCCTGGTCGACATAGCGAGCAGTGTTGTT 1164867
Query 110796 GAAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGA 110855
|||||| | |||||||||| || || | ||| ||| || ||||| || |||
Sbjct 1164868 GAAGACACGAAGCATAGGAACAACACCGTTCGATGTACCGTTGGTACCGGCGATATAGGA 1164927
Query 110856 CTTATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTG 110915
| | ||||| || ||| | | || |||||||||||| ||| ||| ||
Sbjct 1164928 GCCAGTAGCACGGATACGGTGCACGTTCAGACCAATACCACCAGCCATCTTGGAGATCAT 1164987
Query 110916 TGCACA-CTCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTA 110974
||||| ||| |||| ||| | || || || ||||| || |||| | ||| |
Sbjct 1164988 GGCACAGGTCT-TGAGAGTATCGTAGATTCCCTCAATACTGTCGTCCTTCATATCAACCA 1165046
Query 110975 GAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCAT 111034
|||||||| |||| || || |||| || || || |||||||| || || | ||||
Sbjct 1165047 AGAAGCAAGATGACAATTGGGGCTGAGGGGTGCCGGCGTTGAAGAGCGTGGGAGAGGCAT 1165106
Query 111035 GAATGAACAGACCTTG--GGACATCTTGTTGTATGTGTC 111071
| ||| ||| ||| ||||||| ||||||||| ||
Sbjct 1165107 GTGTGA--AGAATTTGCTGGACATCAGGTTGTATGTCTC 1165143
>seq944
Length=943179
Score = 104 bits (114), Expect = 3e-17
Identities = 250/373 (67%), Gaps = 18/373 (5%)
Strand=Plus/Plus
Query 11592 GAAACCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGG 11651
||||||||||||||| ||||||| |||||| | || ||| ||||||||||||
Sbjct 487111 GAAACCGTCCATTTCAGTGAGAATCTGGTTCAGAGTTGCTTCCCGCTCATCGTTGCCAC- 487169
Query 11652 CATACCACCTGCCGAACGCTTCTTACCGACA-------GCGTCAATCTCATCGATGAATA 11704
|| | | || |||| | | | | | || |||||||||||||| ||||| |
Sbjct 487170 CAAATCCCCGGCCGCTCTCCTGTCGCGCACGTCCAATTGCGTCAATCTCATCAATGAAGA 487229
Query 11705 CGATACACGGTTGGTTGGCACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAA 11764
||| || || ||| |||| | | |||| | || | ||||| | || |
Sbjct 487230 TGATGCAAGGGGCGTTCTTACGTCCTTCGGCGAACAAATCTCTCACACGTGAAGGACCGA 487289
Query 11765 CACCTACGAACATCTCAACGAAGTTTG--CGGCAGAACACTGAATGAAGGGAACATTAGA 11822
|||| || ||||| |||||||| | | | || | ||||||| ||| || || |||
Sbjct 487290 CACCGACAAACATTTCAACGAACTCAGAACCGCTCA-CACTGAA-GAATGGTACTCCAGA 487347
Query 11823 CTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAG 11882
||| || || |||| || || | |||||||| |||||||| | |||||| | |
Sbjct 487348 CTCGCCGGCCGTGGCCTTGGCAAGCAATGTCTTACCGGTACCAGGAGGACCAGCTAAGAT 487407
Query 11883 GGCGCCACGGGGGATCTTGGCACC---ACTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAA 11939
|| || || |||||||||||||| || | || | ||| |||| ||| |||||
Sbjct 487408 AGCACCTCGAGGGATCTTGGCACCTAGCTTTTCGAATT---TCTCGGGCTGCTTCAGGAA 487464
Query 11940 GTCCACAATCTCC 11952
| ||||| ||||
Sbjct 487465 GCTCACAAACTCC 487477
>seq3041
Length=162509
Score = 86.0 bits (94), Expect = 7e-12
Identities = 206/303 (68%), Gaps = 9/303 (3%)
Strand=Plus/Plus
Query 119495 GGCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCC 119554
|||||| || ||||| || ||||| |||||||||||||| || |||| || ||
Sbjct 154892 GGCAAAGTCAGTGTGAAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACC 154951
Query 119555 AGGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGAT 119614
|||||||| || | ||||| ||||| ||||| | || ||| ||||||||
Sbjct 154952 GGGCATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGCACCACTGAAGAAGAT 155011
Query 119615 GCCCTCCACACAGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAG-ACTTGTC---GA 119670
||||| ||| |||||||| | ||||||| || ||||| ||| ||| || ||
Sbjct 155012 ACCCTCAACAGCAGCGAAAGCAACGAGACGCTGGGC-AAAGGAGGAGTCCTTATCCTGGA 155070
Query 119671 ACCACTTGAGAGCCCAGTTGGCCTTACGCTC-TATGCAGGGGACAGTTTGGATGGC-TTC 119728
||| || ||||||| |||||| | || |||||||||| || | ||||| ||
Sbjct 155071 TCCATCGGATGGCCCAGTCGGCCTT-CTTTCGGATGCAGGGGATGGTCTCAATGGCGTTA 155129
Query 119729 GAAAAGTTGCTTCTTTTCAGCACCATCCTTAATATATTTATCAATGAGTTTAGAGTAGGT 119788
| | || | ||| | || ||||| || || | |||||||| ||||||||
Sbjct 155130 AAGAGGTAGGTTC-GCTGGGCGGGCTCCTTGATGTAGGTGTCAATGAGCAGGGAGTAGGT 155188
Query 119789 CTC 119791
|||
Sbjct 155189 CTC 155191
>seq1887
Length=3464760
Score = 86.0 bits (94), Expect = 7e-12
Identities = 122/172 (71%), Gaps = 0/172 (0%)
Strand=Plus/Minus
Query 158480 ATGGGCGTGTGGCACCTCGTTCGGGTTTGGCTGTGAAGCACTGTATCAACGTTGGTGCGG 158539
|||| || | || ||||| |||||| | ||| ||||| | || || || || |
Sbjct 2786895 ATGGACGCATTGCCCCTCGATCGGGTCTCGCTTCCAAGCATTTCATTGACACAGGCGCTG 2786836
Query 158540 GGGTCATCGATCCTGATTATACTGGAGAAGTCAAAGTCGTTCTCTTCAATCATGGAGACA 158599
| ||||||||| | ||||| || | ||||| ||| | |||||||| ||| ||
Sbjct 2786835 GTGTCATCGATGCCGATTACCGCGGCCAGGTCAAGGTCCTGCTCTTCAACCATAACGAAT 2786776
Query 158600 AGGACTTTGAGGTTAAGAAGGGTGATCGCATCGCACAGCTTGTTCTAGAACG 158651
||||||||||| ||| |||| || ||||| || ||||||||||| || ||
Sbjct 2786775 CCGACTTTGAGGTGAAGGAGGGCGACCGCATTGCTCAGCTTGTTCTGGAGCG 2786724
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588949812654600
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