Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702615 .1_202016-08-10] 3,557 sequences; 56,803,069 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq2893 210 3e-49 seq3041 138 1e-27 >seq2893 Length=1271672 Score = 210 bits (232), Expect = 3e-49 Identities = 1138/1783 (64%), Gaps = 57/1783 (3%) Strand=Plus/Plus Query 105551 TCAAGACTGAACTGAATTGGGCGCGCCTTTGCCTTAGATCGGAGATAGTACATCCCGGTC 105610 |||| | |||||||||| || || |||| | || || |||||||| || ||| Sbjct 1163444 TCAACAGTGAACTGAATAGGAGCAGCAGCAGCCTGTGTACGAAGGTAGTACATGCCAGTC 1163503 Query 105611 TTGAGTCCTTGTTTCCACGCGTACATA-TGCATAGAAGAGAGCTTGGACATCGTTGGACT 105669 ||||| || | ||||| || | || | |||||| | || |||| |||||| || Sbjct 1163504 TTGAGGCCAAGCTTCCA-GCCTGCAAAGTGCATACTGGTGATCTTGCCCATCGTGGGGTC 1163562 Query 105670 TTCCATGAAAAGATTCAT--ACTTTGACTCTGGTCAATGAAGCGACCACGTTGTGCCGCC 105727 || |||| | |||| ||| |||| | ||||||||| ||| || | || ||| Sbjct 1163563 TTTCATGTGGATGTTCAGTGACTGGGACT--GATCAATGAAGGCACCTCGATCAGCAGCC 1163620 Query 105728 ATATCAATGACATCCTTCATCTTGATTTCCCACACTGTGCGGTAGAGATTCTTGATATCA 105787 || | || ||| | | ||| ||||| || || || ||| ||||| ||| Sbjct 1163621 ATCTGAACGACTTGGCGCTGAGAGATCTCCCAAACGGTCTTATACAGAGCCTTGACATCG 1163680 Query 105788 TCTGGGATATCTGAGATATTTTGAATTGAACC---CCCCGCCTTGACCATGAGATCCTTC 105844 | ||||| | | || || ||||| ||||| | | || ||| || | | |||| Sbjct 1163681 GCAGGGATGTTGGGAATGTTCTGAATGGAACCATTCTCAGCAATGA---TGCGGTTCTTC 1163737 Query 105845 ATATCCTTGGACCAAAGACCAATCTTCTTGAGATCATTGACGAGATGCTTGTTGACAATC 105904 ||| | | |||||| ||||| || | || || |||| || |||||||| | Sbjct 1163738 ATAGCATCGGACCACAGACCCATGTCGACAAGGTCCTTGAGCAGCCAGGGGTTGACAACC 1163797 Query 105905 ACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTCGTGTAGGGTTCAAAGCAT 105964 ||||| || ||||| | || | |||||||| | |||||||| || ||||| Sbjct 1163798 TGGAACTCACCAGCGAGAACACGTCGTTGGTAGATGTTGGAGGTGTAGGGCTCGAAGCAC 1163857 Query 105965 TCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTG 106024 || || || |||| || || | ||| ||| || ||||| || || | | |||||| Sbjct 1163858 TCGTTGTTGCCCAGAATCTGGGAGGTACTGGCAGTAGGCATAGGAGCAAGGAGCAGACTG 1163917 Query 106025 TTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAACA---TCCCAGTCGTAGTTG--A 106079 ||||| | || | | ||||| ||||| ||| | |||||||| || | | Sbjct 1163918 TTACGGATGCCGTGTGTCTTGAC---TTCCTCTCGAAGAGTCTCCCAGTCCCAGAGGTCA 1163974 Query 106080 GCTTGGTTTCACCTTCCCACATATCAAATTGAAGCACCCCTTGGGACGTGGGAGAACCCT 106139 | || || || |||| |||| || || || || | || | || | ||| ||||| | Sbjct 1163975 GAG-GGCTTGACGTTCC-ACATGTCGAACTGGAGGATACCCTCAGAGGCGGGGGAACCTT 1164032 Query 106140 CAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATT-CACAGCTCGCCTCCAGGGATGCG 106198 || || |||| ||| | | | ||||| | ||| | || |||| ||| Sbjct 1164033 TGAAGGTGGAGTAGGGACCCTCCTCCTTAGCCAGCTGCACGGAG-GCAGTGAGGGCAGCG 1164091 Query 106199 TGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGCG 106258 || || ||||| || ||||| | || | ||| || || ||| || || | Sbjct 1164092 TGGTAAATGGTCTCGAAGATCTGCTTGTTGAGCTCACGAGCCTCGGGTGACTCGAAGGGC 1164151 Query 106259 TAGCGGCACAA-AATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTG 106317 ||| || | || || |||| || || || |||||||| | |||||| |||| ||| Sbjct 1164152 ATGCG-CAGAGCAAGGAAAGCATCGGCAAGGCCCTGAACACCAAGACCAATGGGTCGGTG 1164210 Query 106318 TCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTT 106377 ||||| ||| || || || || || || || || || |||| ||| Sbjct 1164211 GCGCATGTTACTGTTGCGAGCCTCCTGGACAGGGTAGTGGTTCACATCGATGATCTTGTT 1164270 Query 106378 TAGATTTTTGGTAACAATCTTTGTGATTTCATG-AAGTTTTTCATAATCAAAAGTGCGAG 106436 || || |||||| || ||| | || || || || | | || | || || Sbjct 1164271 CAGGTTGCGAATAACAACCTGACTGACCTTGTGCAACTTCTTGA-AGTCGTA---GCAAG 1164326 Query 106437 TCTCTTCAT---TGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCT 106493 ||| || | ||| | || || || | || || | ||||| ||||| || Sbjct 1164327 CCTCATCGTAGTTGATGAAAGAGGGCAGAGCCAGAGAGGCAAGGTTGCAGACAGCGACCT 1164386 Query 106494 CATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCA 106553 | || | |||||| | |||||| || |||| |||||| || || || || | Sbjct 1164387 CGTCAGGGGCACAGTACTCAATAATTTCAGTGCACAGGTTGGAGCTTCGGATGGTACCGA 1164446 Query 106554 AATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCG 106613 ||||||||||| ||||| |||||| |||||||||||||||||| | || | || | Sbjct 1164447 GGTTCTTTTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAATGGGTTTCCGG 1164506 Query 106614 TCTCCGTCTGTGACTTGAGAATTGCCTTCCACACAT-CGGCGGCTGG-TACAATGGCGTT 106671 |||| ||||| | || ||||| || | ||| | | | | | || | || | ||| Sbjct 1164507 TCTCAGTCTGGGCCTCAAGAATGGCGTACCAAAGTTTCTGAGCCTTGATAGTCTTGCGA- 1164565 Query 106672 GGCCCGT-CCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGT 106730 ||| | |||||| |||||||||| ||| || || || |||||||| || || Sbjct 1164566 --CCCTTGCCCTCCTTCTCGTACTTTTCGTACAGAGCCTCGAACTCCTCTCCGTAGCAGT 1164623 Query 106731 CGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCC 106790 ||| ||| || || || || || || | || | ||| | || || ||||| | Sbjct 1164624 CGGCGAGGCCAGGGCACTCGTTGGGGCACATCAGCGTCCAGTCGCCGTTCTTTTCAACAC 1164683 Query 106791 GCTTCATGAAAAGGTCTGGAATCCACAGGG--ATGAAAAGAGATCTCTA-CACCGAGCCT 106847 ||||||||||||| || || ||||| |||| | |||||| || | ||| || ||| Sbjct 1164684 GCTTCATGAAAAGATCAGGGATCCAAAGGGCGAGGAAAAGG--TCACGGGCACGGA-CCT 1164740 Query 106848 CTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCT 106907 | || | ||| ||||| || | ||||||||||| | || ||| | |||||| |||| Sbjct 1164741 CCTCTTTACCGTGGTTCTTACGGAGATCAAGGAACTCGAAGACATCAGAGTGCCAAGGCT 1164800 Query 106908 CAAGATAGACTGCGATAGATCCCTTTCGACGC---CCAGCTTGATTTACATAGCGCGCTG 106964 | || |||| || | || || ||| ||| | || | |||||||| || | Sbjct 1164801 CGAGGTAGATGGCAAAAGCACCGGGTCGCTTGTTGCCACCCTGGTCGACATAGCGAGCAG 1164860 Query 106965 TGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCC-CGA 107023 || ||| || || |||||||| |||| || ||| | ||| ||| || || || ||| Sbjct 1164861 TGTTGTTGAAGACACGAAGCATAGGAACAACACCGTTCGATGTACCGTTGGTACCGGCGA 1164920 Query 107024 -ATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTT 107082 ||| ||| | | || | | | || | || || |||||||| |||||| ||| Sbjct 1164921 TATAGGAGCC--AGTAGCACGGATACGGTGCACGTTCAGACCAATACCACCAGCCATCTT 1164978 Query 107083 TGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTT 107142 ||||| ||||| | | ||||| | ||||| || | || ||| ||||| | Sbjct 1164979 GGAGATCATGGCACAGGTCTTGAGAGTATCGTAGATTCCCTCAATACTGTCGTCCTTCAT 1165038 Query 107143 GGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGG 107202 | | | ||||||| |||| || || || || || || |||||||| || || Sbjct 1165039 ATCAACCAAGAAGCAAGATGACAATTGGGGCTGAGGGGTGCCGGCGTTGAAGAGCGTGGG 1165098 Query 107203 TGTTGCGTGAATGAACATACCTTG--GGACATCTTGTCGTATGTCTCCAAGACAGAATCA 107260 | || || |||| | ||| ||||||| || ||||||||||||||| || Sbjct 1165099 AGAGGCATGTGTGAAGAAT--TTGCTGGACATCAGGTTGTATGTCTCCAAGACTCGCTCG 1165156 Query 107261 ATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATGT 107303 || || || || || || | | ||||||||| | ||||| Sbjct 1165157 ATATCATCACCCCAAATACCAACAGACACACGCATGATCATGT 1165199 >seq3041 Length=162509 Score = 138 bits (152), Expect = 1e-27 Identities = 337/504 (67%), Gaps = 20/504 (4%) Strand=Plus/Plus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045 ||||| |||| |||||||| |||||||||||||| ||| ||||| ||||| ||||| Sbjct 154605 TAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTCTCCATG 154664 Query 117046 AAGTCAAATGGATTCTTCGCGTTCCAAA-----TGGGTGGCACCC-CAACTTGTTTGAGG 117099 ||||| || || || | || || ||| | | || || | | || ||| Sbjct 154665 AAGTCGAAGGGGTTGGTGGCCTTGTAAACCTTCTCGTTGCCAAGCGCGACA------AGG 154718 Query 117100 AGACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGA 117159 |||||||| | || |||||||||||| ||| ||||||||||| |||| || Sbjct 154719 AGACGATCAGCGACGAACTCAATGTACTGCTTCATGAGGTCAGAGTTCATGCCGAGAAGG 154778 Query 117160 TTACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATG 117219 ||| || || || || || |||| | | ||||||| || || || | | ||| Sbjct 154779 GCACAGGGAAGAGCCTCAGTGAGGAACTCCTGCTCAATCGTGACGGCATCAGTAATGATA 154838 Query 117220 GCGTGGATAGTTTCGGTAGTGGGTCTA---TTACGCAAAGTCTTGAAGAGCTCCACGGCA 117276 | ||||| | | | ||| | | || | || | || ||| || |||| Sbjct 154839 TCCTGGATCATCTGCTTGCTGGCACGACCCTTGAGGTGAGAGTGGAGGAGG--CA-GGCA 154895 Query 117277 AACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGC 117336 || || ||| ||||||||||| || || || || || || |||||| || || ||| Sbjct 154896 AAGTCAGTGTGAAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCGGGC 154955 Query 117337 ATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCC 117396 |||||||| |||||||| | ||| | |||| | ||| | || ||||||||||||| Sbjct 154956 ATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGCACCACTGAAGAAGATACCC 155015 Query 117397 TCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGT-GTCAAACCA 117455 || ||| || || |||| || |||| ||| |||||| ||| | || | | | ||| Sbjct 155016 TCAACAGCAGCGAAAGCAACGAGACGCTGGGCAAAGGAG-GAGTCCTTATCCTGGATCCA 155074 Query 117456 TTTCATTGCCCATTTCGCCTTCTT 117479 | || ||||| | |||||||| Sbjct 155075 TCGGATGGCCCAGTCGGCCTTCTT 155098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589954567978680