Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702615 .1_202016-08-10] 3,557 sequences; 56,803,069 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq102 98.7 6e-16 seq579 89.7 3e-13 >seq102 Length=1299131 Score = 98.7 bits (108), Expect = 6e-16 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTC-CGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 || ||||| ||||| ||||| | |||| | || |||| |||| ||| || || || || Sbjct 988206 TCCTTCTGGATGTTGTAGTCGCTCAAGG-TGCGACCATCTTCCAACTGCTTACCAGCGAA 988148 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || || || || || | || | ||||||||||| |||||| || ||| Sbjct 988147 GATAAGACGCTGTTGATCAGGGGGAATACCCTCCTTGTCCTGAATCTTGCTCTTCACGTT 988088 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | || | |||| || ||| || || | ||| ||||| ||||| |||||||||||||| Sbjct 988087 GTCGATAGTGTCACTGGACTCGACCTCAAGGGTGATGGTCTTTCCGGTGAGAGTCTTCAC 988028 Query 34970 AAAGATCTGCATA 34982 ||| ||||||||| Sbjct 988027 AAAAATCTGCATA 988015 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/214 (70%), Gaps = 8/214 (4%) Strand=Plus/Minus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||| | ||||| ||| || ||||||||||| || || || || | || | || || Sbjct 987487 AACAAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGAGAGAGTGCGGCCGTCCTC 987428 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 ||||| || ||||| || || | ||||||||||| | || | ||||||||||| Sbjct 987427 AAGCTGCTTGCCGGCGAAAATCAAGCGTTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTG 987368 Query 34892 AATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGG 34947 |||||| ||||| || | ||||| || | |||||| |||| ||| |||| Sbjct 987367 AATCTTGGACTTGAC--AT--TGTCGATAGTGTCGGAAGACTCAACCTCGAGGGTGATGG 987312 Query 34948 TTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || || || | ||||| || ||||||||||| Sbjct 987311 TCTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 987278 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/216 (69%), Gaps = 10/216 (5%) Strand=Plus/Minus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||||||| | || ||| ||||||||||| ||||| ||||| |||| |||| || Sbjct 987997 AACCAAGTGGAGAGTAGATTCCTTCTGAATGTTGTAGTCGGAAAGAGTTCGGCCATCTTC 987938 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 || || || || || || || ||||| || || || | || | ||||||||||| Sbjct 987937 AAGTTGCTTGCCAGCGAAGATGAGTCGCTGTTGATCGGGAGGAATACCCTCCTTGTCCTG 987878 Query 34892 AATCTT-CTGTT----TGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATG 34946 ||||| || || | | ||| ||||| | | ||| || || | || ||| Sbjct 987877 GATCTTGCTCTTCACATTATCAATGGTATCGGAT-----GACTCGACTTCCAGAGTAATG 987823 Query 34947 GTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || ||||| ||||| ||||| || ||||| |||||| Sbjct 987822 GTCTTTCCAGTGAGGGTCTTGACGAAGATTTGCATA 987787 Score = 86.0 bits (94), Expect = 4e-12 Identities = 131/185 (71%), Gaps = 10/185 (5%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||||||||| ||||| | |||| |||| |||| || || || ||||| ||||| Sbjct 987751 TTCCTTCTGAATGTTGTAGTCGGCAAGGGTTCGGCCATCTTCGAGTTGCTTTCCAGCAAA 987692 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGAC--- 34906 || || || |||||||| | || | ||||||||||| |||||| || || Sbjct 987691 GATCAGACGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGAATCTTTGACTTAACATT 987632 Query 34907 --GGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTC 34964 |||| ||||| || | ||| || || | ||| ||||| || || ||||| ||| Sbjct 987631 GTCGATGGTATCG---GAC--GACTCGACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTC 987577 Query 34965 TTCAC 34969 || || Sbjct 987576 TTGAC 987572 >seq579 Length=310369 Score = 89.7 bits (98), Expect = 3e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| || ||||| ||||| ||||| ||| | ||| |||| || Sbjct 279222 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGTCCATCCTCG 279281 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || ||||| || ||||| |||||||| | || | ||||||||||| Sbjct 279282 AGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 279341 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| |||||| | || | || | ||| || || | ||| || || || Sbjct 279342 ATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTC 279401 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 |||||||| ||||| || || |||||||| || Sbjct 279402 CCCGTGAGGGTCTTGACGAAAATCTGCATCTT 279433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324619526829096