Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702615 .1_202016-08-10] 3,557 sequences; 56,803,069 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq102 96.9 3e-14 seq1887 93.3 3e-13 seq3044 91.5 1e-12 >seq102 Length=1299131 Score = 96.9 bits (106), Expect = 3e-14 Identities = 155/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 |||||||| || | || || ||| ||| || ||| ||||| || | ||||||| Sbjct 988005 AGACGGAGAACCAAGTGGAGAGTAGATTCCTTCTGAATGTTGTAGTCGGAAAGAGTTCGG 987946 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 |||||||||||| || || || || || |||| || ||||| |||||||| || || Sbjct 987945 CCATCTTCAAGTTGCTTGCCAGCGAAGATGAGTCGCTGTTGATCGGGAGGAATACCCTCC 987886 Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGT 563435 || || || || || || || ||||| ||||| | ||| | | ||| ||||| Sbjct 987885 TTGTCCTGGATCTTGCTCTTCACATTATCAATGGTATC-GGATGACTCGACTTCCAGAGT 987827 Query 563436 AACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 || || || ||||| || || || ||||| ||||||||| Sbjct 987826 AATGGTCTTTCCAGTGAGGGTCTTGACGAAGATTTGCATA 987787 Score = 93.3 bits (102), Expect = 3e-13 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 563256 GAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCT 563315 ||| ||||| || |||||||||||| ||| || ||| ||||| || || || |||| Sbjct 987778 GAGGCGGAGGACGAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCGGCAAGGGTTCG 987719 Query 563316 TGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTC 563375 |||||| ||||| ||||| ||||| || || | ||||| |||||||| || || || Sbjct 987718 GCCATCTTCGAGTTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGGATGCCCTC 987659 Query 563376 TTTATCTTGAATTTTT 563391 || || ||||| ||| Sbjct 987658 CTTGTCCTGAATCTTT 987643 >seq1887 Length=3464760 Score = 93.3 bits (102), Expect = 3e-13 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 390901 TTAACTAATTTTCTTTGGATATAACCAGTGTCTGCAGTTTTAATTGCAGTATTAATAATA 390960 ||||| ||| || ||||||||||| || || ||||| || | |||||||| ||| | | Sbjct 1069653 TTAACCAATCGTCGCTGGATATAACCTGTTTCGGCAGTCTTGACTGCAGTATCAATGAGA 1069712 Query 390961 CCTTCTCTTCCTGCCATAACTTGGAAGAAAAATTCCATAGGATTGAGTCCA 391011 ||||||| || ||||| | |||||||||||||| ||||| |||| ||| Sbjct 1069713 CCTTCTCGACCAGCCATGGCGTGGAAGAAAAATTCGCTAGGAGTGAGACCA 1069763 Score = 91.5 bits (100), Expect = 1e-12 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATT 550468 ||||| || || || || || || || || ||||||||||| || |||||||| | || Sbjct 1350952 ACTGTCCCCGCCTACTTCAACGATTCTCAGCGTCAAGCTACCAAGGATGCTGGTCTCATC 1351011 Query 550469 GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGA 550528 || || || || ||||| || || ||||| || ||||||||||| || |||| || || Sbjct 1351012 GCCGGTCTCAACGTTCTCCGAATCATCAACGAGCCTACTGCTGCCGCCATTGCCTACGGT 1351071 Query 550529 CTTGATAA 550536 ||||| || Sbjct 1351072 CTTGACAA 1351079 Score = 89.7 bits (98), Expect = 4e-12 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 720790 CCATCCCTTCCTGCACGACCAATTTCTTGATAATATCCTTCAATATTTTTAGGTGCACCA 720849 ||||| || ||||| || ||| | || |||||||| ||||| | | || || |||| Sbjct 2251774 CCATCTCTGCCTGCGCGGCCAGTCTCCTGATAATAGCCTTCCAGGCTCTTTGGAAGACCA 2251715 Query 720850 TAATGTATAACTGCTCTCACATCACTTTTATTTATTCCCATTCCAAAAGCAATCGTCGCA 720909 | |||||||| |||||||||| || | || ||||||||||| || || || ||| Sbjct 2251714 TGGTGTATAACGAATCTCACATCAGGCTTGTCAATACCCATTCCAAATGCGATTGTAGCA 2251655 Query 720910 ACCATAACTTTAAC 720923 |||| ||||||||| Sbjct 2251654 ACCACAACTTTAAC 2251641 >seq3044 Length=122890 Score = 91.5 bits (100), Expect = 1e-12 Identities = 124/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 550004 GATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAAATTATT 550063 ||| | ||||||||||| || ||||| ||||| ||| || || || ||||| ||| | Sbjct 83793 GATCTTGGAACCACATACAGCTGTGTCGGTGTGATGCAGAAGGGCAAGGTTGAGATTCTC 83852 Query 550064 GCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACTGAACAT 550123 | ||| ||||| |||||| ||| ||||| ||||| || | ||||| || ||| | | Sbjct 83853 GTCAACGATCAGGGTAACCGAATCACTCCCTCTTACGTCGCCTTCACCGAGGATGAGCGT 83912 Query 550124 TTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACTAT 550176 || ||||| || || || || | || ||| | | ||| || || || || || Sbjct 83913 TTGGTTGGAGACGCCGCCAAGAACCAGGCCGCCGCTAACCCCACGAACACCAT 83965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029107889797930