Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702615
.1_202016-08-10] 3,557 sequences; 56,803,069 total letters
Query= NC_018875.1
Length=119082
Score E
Sequences producing significant alignments: (Bits) Value
seq102 100 2e-16
seq3046 86.0 5e-12
>seq102
Length=1299131
Score = 100 bits (110), Expect = 2e-16
Identities = 144/203 (71%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623
|| || ||| ||| || ||||| ||||||||||| ||| | || |||| || | ||||
Sbjct 987480 TGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGAGAGAGTGCGGCCGTCCTCAAGCTGC 987421
Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683
|| ||||| || |||| || || || || | ||||| |||||||||||| ||||||
Sbjct 987420 TTGCCGGCGAAAATCAAGCGTTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGAATCTTG 987361
Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743
|| ||| | | || || || | ||| ||||| | || || || || || |||
Sbjct 987360 GACTTGACATTGTCGATAGTGTCGGAAGACTCAACCTCGAGGGTGATGGTCTTGCCGGTC 987301
Query 48744 AAAGTTTTTACAAAAATCTGCAT 48766
|| || || || || ||||||||
Sbjct 987300 AAGGTCTTGACGAAGATCTGCAT 987278
>seq3046
Length=363889
Score = 86.0 bits (94), Expect = 5e-12
Identities = 76/95 (80%), Gaps = 0/95 (0%)
Strand=Plus/Minus
Query 48579 TTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATC 48638
|| || || ||||| || || ||| |||| | || || | ||||||||| || || |||
Sbjct 198991 TTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCGAGCTGCTTACCAGCGAAGATC 198932
Query 48639 AGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673
||||||||||| |||| ||||| ||||||||||||
Sbjct 198931 AGTCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTC 198897
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 380921085997911
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |