Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702615 .1_202016-08-10] 3,557 sequences; 56,803,069 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq2893 358 1e-93 seq3041 199 7e-46 >seq2893 Length=1271672 Score = 358 bits (396), Expect = 1e-93 Identities = 1156/1767 (65%), Gaps = 102/1767 (6%) Strand=Plus/Plus Query 212553 ACCGTAAACTGTACTGGATCAGCAGCAGCCTTGGTGCGTAGATAGTACATGCCGGTCTTT 212612 || || ||||| | ||| |||||||||||| || || || ||||||||||| ||||| Sbjct 1163447 ACAGTGAACTGAATAGGAGCAGCAGCAGCCTGTGTACGAAGGTAGTACATGCCAGTCTTG 1163506 Query 212613 AGGCC---CTTGCCCCAGCCGTGCAT-GTGCATTGCTGTGAGTTTCTTCAGCTTAATATT 212668 ||||| ||| |||||| |||| |||||| |||| |||| | || | Sbjct 1163507 AGGCCAAGCTT---CCAGCC-TGCAAAGTGCATACTGGTGA---TCTTGCCC---ATCGT 1163556 Query 212669 CTGGTCATCCTCGTGGCCCAGATGTAGGTTCAGGGACTGACTCTGGTCTATGAATGGGGC 212728 |||| | | |||| | |||||| ||||| ||| || ||||| | | Sbjct 1163557 GGGGTCTTTCATGTGG---------ATGTTCAGTGACTGGGACTGATCAATGAAGGCACC 1163607 Query 212729 CCTGTCAGCGGCCATGTCTATGATATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGAT 212788 | ||||| ||||| | | || | | ||| |||| |||||| |||||||| | | Sbjct 1163608 TCGATCAGCAGCCATCTGAACGACTTGGCGCTGAGAGATCTCCCAAACGGTCTTATACAG 1163667 Query 212789 TTCTTTGAGGTCCTCTGGGAAGCCGGGGATGTTCTGCACAGACCCCCTGTGTATGGTCAG 212848 | |||| || | |||| | ||| |||||||| | || || || |||| Sbjct 1163668 AGCCTTGACATCGGCAGGGATGTTGGGAATGTTCTGAATGGAACC-------ATTCTCAG 1163720 Query 212849 C--TGCAGGCG------CATGTCCTCGTTCCAGAGGCCCCTGGTCTCCAGGCACTTGACC 212900 | || | ||| ||| | ||| ||| || ||| || | ||| ||||| | Sbjct 1163721 CAATG-ATGCGGTTCTTCATAGCATCGGACCACAGACCCATGTCGACAAGGTCCTTGAGC 1163779 Query 212901 AGGTGAGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAA 212960 || |||||||| | |||||| ||||| | ||| || | | ||||| | ||| || Sbjct 1163780 AGCCAGGGGTTGACAACCTGGAACTCACCAGCGAGAACACGTCGTTGGTAGATGTTGGAG 1163839 Query 212961 GTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATG 213020 ||||||||||||| || ||||||||| ||||||||||| | || ||||| || ||||| Sbjct 1163840 GTGTAGGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGGGAGGTACTGGCAGTAGGCATA 1163899 Query 213021 GGAGCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGC---CGAAGC-TC 213076 ||||| | || |||||||| | | ||||| | | ||| | ||||| || Sbjct 1163900 GGAGCAAGGAGCAGACTGTTACGGATGCCGTGT--GTCT-TGACTTCCTCTCGAAGAGTC 1163956 Query 213077 TGCCCAGTCCCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAA 213136 | |||||||||| | |||| | ||| |||||||||||||| ||||| | Sbjct 1163957 T-CCCAGTCCCAGAGGTCAGAGGG---------CTTGACGTTCCACATGTCGAACTGGAG 1164006 Query 213137 GATGCCTTTGCTCA----CGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGG 213192 ||| || |||| ||||| || | | | | ||||||||| || | |||||| | Sbjct 1164007 GATACC----CTCAGAGGCGGGGGAACCTTTGAAGGTGGAGTAGGGACCCTCCTCCTTAG 1164062 Query 213193 CCAGCTCGCA-GGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTG 213251 |||||| ||| ||| || |||||||||| ||| ||||| || || |||| | ||||| Sbjct 1164063 CCAGCT-GCACGGAGGCAGTGAGGGCAGCGTGGTAAATGGTCTCGAAGATCTGCTTGTTG 1164121 Query 213252 AGCTTCTTGGCCTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGC 213311 |||| ||||| || ||| ||||||||| || |||| |||| || || Sbjct 1164122 AGCTCACGAGCCTCGGGTGACTCGAAGGGCATGCGCAGAGCAAGGAAAGCATCGGCAAGG 1164181 Query 213312 CCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTG-GAGCACTCCTCCAA 213370 ||||| || || | || ||||||| ||| | || |||| ||| |||| ||||| | Sbjct 1164182 CCCTGAACACCAAGACCAATGGGTCGGTGGCGCATGTTACTGTTGCGAGC-CTCCTGGAC 1164240 Query 213371 GGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATG 213430 ||||| ||| |||||||||||||| |||||||| | | || | |||| | Sbjct 1164241 AGGGTAGTGGTTCACATCGATGATCTTGTTCAGGTTGCGAATAACAACCTGACTGACCTT 1164300 Query 213431 GGCCAGGTACTCGTGATTGAACACGTAGC------CCCCGTCCTGCACAAACTCAGGCAG 213484 | || || | ||||| |||||| | ||| | | || ||||| Sbjct 1164301 GTGCA---AC---TTCTTGAAGTCGTAGCAAGCCTCATCGTAGTTGATGAAAGAGGGCAG 1164354 Query 213485 GGCGATGCTGGCCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTC 213544 || | ||| |||||||| || || ||||| | || | | |||||| || || || Sbjct 1164355 AGCCAGAGAGGCAAGGTTGCAGACAGCGACCTCGTCAGGGGCACAGTACTCAATAATTTC 1164414 Query 213545 GGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGC 213604 |||||||||||| || ||||||||| || ||||||| ||| ||| ||||| | || Sbjct 1164415 AGTGCACAGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGG-TTGCTCTTGCGGTTGC 1164473 Query 213605 A-GAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGC 213663 | | |||||||||||||||| | ||| |||||||| ||||| | | || || | Sbjct 1164474 AGGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCCTCAAGAATGGCGT 1164533 Query 213664 TCCAGAGGTACCTGGCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGCCTCGTACTGTT 213723 ||| || | | ||||||| | | ||| | | | | |||||||| || Sbjct 1164534 ACCAAAGTTTCTGAGCCTTGA-TAGTCTTGCGACCCTTGCCCTCCT--TCTCGTACTTTT 1164590 Query 213724 CGTAGAGCTCGTTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGACAGGATGCGGGAC 213783 |||| || | | ||| || | || || | | || || || || ||| | Sbjct 1164591 CGTACAGAGCCTCGAACTCCTCTCCGTAGCAGTCGGCGAGGCCAGGGCACTCGTTGGGGC 1164650 Query 213784 ACATGAGGCTCCAGTCCCCGTCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACA 213843 |||| || ||||||| |||| | | || | || |||||| || || |||| ||| | Sbjct 1164651 ACATCAGCGTCCAGTCGCCGTTCTTTTCAACACGCTTCATGAAAAGATCAGGGATCCAAA 1164710 Query 213844 GCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTA 213903 | ||| ||| ||||| | || | ||| || || ||| || || ||||| | Sbjct 1164711 GGGCGAGGAAAAGGTCACGGGCACGGACCTCCTCTTTACCGTGGTTCTTACGGAGATCAA 1164770 Query 213904 GAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCG---GCC 213960 | || || |||| || | |||||| ||||| | |||||||||||| || || | || Sbjct 1164771 GGAACTCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTCGCT 1164830 Query 213961 TCTTGCCGCCCTGGTCCACCAGCCTGGCCACCA----TGTTGAAGATGCGCAGGACGGGT 214016 | ||||| |||||||| | | | || | || ||||||||| || || | || Sbjct 1164831 TGTTGCCACCCTGGTCGA----CATAGCGAGCAGTGTTGTTGAAGACACGAAGCATAGGA 1164886 Query 214017 ACCAGCCCGTTGGACTGT-CCGTTGGTTCCCGCTATATACGAGCCGGAGGCCC--TCAGG 214073 || | ||||| || ||| |||||||| || || ||||| ||||| | || | | | Sbjct 1164887 ACAACACCGTTCGA-TGTACCGTTGGTACCGGCGATATAGGAGCCAGTAGCACGGATACG 1164945 Query 214074 TTGCTCATGGAGAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACA 214133 ||| | | ||| || || ||||| || ||||||||||||||| ||| | | | | Sbjct 1164946 GTGCACGTTCAGA--CCAATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGA 1165003 Query 214134 GTCTCCATGATGCCGGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGC 214193 || || ||| || | || ||||| || | | | | ||||||||| || | Sbjct 1165004 GTATCGTAGATTCCCTCAATACTGTCGTCCTTCATATCAACCAAGAAGCAAGATGACAAT 1165063 Query 214194 TGGGGCCTGGACGAGCCAGAGTTGAAAAGCGTGGGGCTGGCATGGATCATAAACTTGTTA 214253 |||||| | | ||| | |||||| |||||||| |||||| | | || ||| | Sbjct 1165064 TGGGGCTGAGGGGTGCCGGCGTTGAAGAGCGTGGGAGAGGCATGTGTGAAGAATTTGCTG 1165123 Query 214254 GAGAGGAGCCTGTAGGTCTCCAGGACT 214280 || | || |||| ||||||| |||| Sbjct 1165124 GACATCAGGTTGTATGTCTCCAAGACT 1165150 >seq3041 Length=162509 Score = 199 bits (220), Expect = 7e-46 Identities = 493/738 (67%), Gaps = 29/738 (4%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||||||||| | || | ||||| |||||||| ||||| || | | ||||||||||| Sbjct 154601 CTGGTAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTCTC 154660 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAG-GCCCATCTGTTCCAGCA 47957 ||||||| ||||||||||| | || || ||| | || ||| | | | || | Sbjct 154661 CATGAAGTCGAAGGGGTTGGTGGCCTTGTAAACCT-TCTCGTTGCCAAGCGCGACAAGGA 154719 Query 47958 GGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGG 48017 | |||| |||||| |||| ||||| | ||||||| ||||||||| | |||| Sbjct 154720 GACGATCAGCGACGAACTCAATGTACTGCTTCATGAGGTCAGAGTTCATGCCGAGAAGGG 154779 Query 48018 ACACGGGCAA-AGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATC 48076 ||| || || ||||| ||||| ||||||| ||| ||| ||||| || | || Sbjct 154780 -CACAGGGAAGAGCCTCAGTGAGGAACTCCTGCTCAATCGTGACGGCATCAGTAATGATA 154838 Query 48077 TGCTTAACGCGGGAC-TCTGAGGGTTTGTTGCGCAGGTGC-TTG------GCATAGAGCA 48128 | || || | |||| ||| || ||| | | ||| | | ||| | Sbjct 154839 TCCT------GGATCATCTGC----TTGCTG-GCACGACCCTTGAGGTGAGAGTGGAGGA 154887 Query 48129 TGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGA 48188 |||||||||||| |||| | || || || || ||||||| ||||||||||| | Sbjct 154888 GGCAGGCAAAGTCAGTGTGAAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCA 154947 Query 48189 GACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGA 48248 |||| ||||||| || | || ||||||||||| || | ||||| | ||| ||||| Sbjct 154948 GACCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGCACCACTGAAGA 155007 Query 48249 AGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTG 48308 |||| ||||| || || ||||| || ||| | || | || || | || ||| || Sbjct 155008 AGATACCCTCAACAGCAGCGAAAGCAACGAGACGCTGGGCAAAGGAGGAGTCCTTATCCT 155067 Query 48309 AGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCC 48368 |||||| | |||||||| |||||||| |||||| || || ||||| ||||| Sbjct 155068 GGATCCATCGGATGGCCCAGTCGGCCTTCTTTCGGATGCAGGGGATGGTCTCAATGGCGT 155127 Query 48369 GGAAGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGT---AGTGAGCAGCTTTGCGT 48425 ||||| | | | || | | ||| | ||||| | ||||||| | || Sbjct 155128 TAAAGAGGTAGGTTCGCTGGGCGGGCTCCTTGATGTAGGTGTCAATGAGCAG---GGAGT 155184 Query 48426 ACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAA 48485 | |||| ||||| | ||||| || ||||||||| ||||||||| | ||||| Sbjct 155185 AGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAACGAGCCTCGG 155244 Query 48486 ACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAG 48545 | ||| || || ||||| ||| | || ||||| ||||| || ||||| || | Sbjct 155245 GGATCTGGACCTCGCCACTGAATCGCTCGACGAGGTTCTCGTTGACAATACCATCAGAGG 155304 Query 48546 CAGCAAAGAAGGCAAGGA 48563 |||| || || ||||||| Sbjct 155305 CAGCGAAAAAAGCAAGGA 155322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931491381722880