Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702615 .1_202016-08-10] 3,557 sequences; 56,803,069 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq2893 251 1e-61 seq3041 181 2e-40 >seq2893 Length=1271672 Score = 251 bits (278), Expect = 1e-61 Identities = 809/1230 (66%), Gaps = 59/1230 (5%) Strand=Plus/Plus Query 221417 GTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG-GCCTCGGG 221475 || |||||||||||||| |||||||| |||||| ||||||||| ||| | |||||||| Sbjct 1164080 GTGAGGGCAGCGTGGTAAATGGTCTCGAAGATCTGCTTGTTGAG-CTCACGAGCCTCGGG 1164138 Query 221476 AGAAGTGAAGGGCATACGCAGCATCT--GAAAGACGTCGGCCAGTCCCTGTACTCCGATA 221533 || ||||||||| ||||| | | ||||| | ||||| || ||||| || || | | Sbjct 1164139 TGACTCGAAGGGCATGCGCAG-AGCAAGGAAAG-CATCGGCAAGGCCCTGAACACCAAGA 1164196 Query 221534 CCGATGGGCCTGTGTCTCCTGTTG--GAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGA 221591 || ||||| | ||| | | |||| | ||| | || |||| || || || ||| | Sbjct 1164197 CCAATGGGTCGGTGGCGCATGTTACTGTTGCGAGC-CTCCTGG-ACAGGGTAGTGGTTCA 1164254 Query 221592 CGTCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGT 221651 | ||||| | ||||| ||||| || | | || | | |||| | || ||||| | Sbjct 1164255 CATCGATGATCTTGTTCAGGTTGCGAATAACAACCTGACTGACCTTGTGCAACTTCTTGA 1164314 Query 221652 GATTGAACACCAACTCGCCGC--CGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAAC 221709 | | | ||| ||| | ||| || || | |||| | || || | Sbjct 1164315 AGTCGTAG--CAA---GCCTCATCGTAGTTGATG---------AAAGAGGGCAGAGCCAG 1164360 Query 221710 GCTGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACA 221769 ||| ||||| || || || |||||||| | |||| || || || || || Sbjct 1164361 AGAGGCAAGGTTGCAGACAGCGACCTCGTCAGGGGCACAGTACTCAATAATTTCAGTGCA 1164420 Query 221770 GAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTC 221829 |||||| || |||||| || |||| || || || |||||| ||| || || Sbjct 1164421 CAGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGGCATC 1164480 Query 221830 CTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAG 221889 |||||||||||| || || || ||||| ||| ||| | ||||| || ||| || Sbjct 1164481 CTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCCTCAAGAATGGCGTACCAAAG 1164540 Query 221890 TTCTCTG-GCGCTCACCGTCCT------CTTGACTGCACCCTCGGTCTTTTCATACCCGG 221942 || |||| || | | ||| | |||| | | |||| |||||| ||| Sbjct 1164541 TT-TCTGAGCCTTGATAGTCTTGCGACCCTTGCCCTCCTTCTCGTACTTTTCGTAC---- 1164595 Query 221943 TATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGAC 222002 ||||| | | |||| || ||||| ||| | ||||| || ||| | ||| | Sbjct 1164596 ---AGAGCCT--CGAACTCCTCTCCGTAGCAGTCGGCGAGGCCAGGGCACTCGTTGGGGC 1164650 Query 222003 ACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACA 222062 ||||||| |||||| ||| | || || | || |||||| || || |||||||| | Sbjct 1164651 ACATCAGCGTCCAGTCGCCGTTCTTTTCAACACGCTTCATGAAAAGATCAGGGATCCAAA 1164710 Query 222063 GCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCA 222122 | || | || || || | || || |||||| |||| ||| || | ||||| | Sbjct 1164711 GGGCGAGGAAAAGGTCACGGGCACGGACCTCCTCTTTACCGTGGTTCTTACGGAGATCAA 1164770 Query 222123 AAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCT 222182 ||||| || | |||| |||||| ||||| || |||| ||| | ||| |||||||||| Sbjct 1164771 GGAACTCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTCGCT 1164830 Query 222183 TGTTGCCACCCTGATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACC 222241 ||||||||||||| || | ||| ||| | |||||||| ||||| | || || Sbjct 1164831 TGTTGCCACCCTGGTCGA-CATAGCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACA 1164889 Query 222242 AGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTG 222301 | ||||| ||| ||||||||| || || || | || || | || ||| | Sbjct 1164890 ACACCGTTCGATGTACCGTTGGTACCGGCGATATAGGAGCCAGTAGCAC---GGATACGG 1164946 Query 222302 -GCA--GACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTG 222358 ||| || || |||||||| || || ||||||||||| ||| |||||||||| Sbjct 1164947 TGCACGTTCAGACCAATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTA 1165006 Query 222359 TCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGA 222418 || ||| ||||| ||| ||| ||||| | | | || || ||||| |||| || Sbjct 1165007 TCGTAGATTCCCTCAATACTGTCGTCCTTCATATCAACCAAGAAGCAAGATGACAATTGG 1165066 Query 222419 GATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGAC 222478 | | | || | |||||| || ||||||||| ||| ||||| ||| | || ||| Sbjct 1165067 GGCTGAGGGGTGCCGGCGTTGAAGAGCGTGGGAGAGGCATGTGTGAAGAATTTGCTGGAC 1165126 Query 222479 ATCAGATCGTACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAAT--CTGCATGGCGC 222536 ||||| | ||| ||||| | ||||| |||| | || || ||| | || | | | Sbjct 1165127 ATCAGGTTGTATGTCTCCAAGACTCGCTCGATATCATCACCCCAAATACCAACA-GACAC 1165185 Query 222537 ATCTCATGTACATGTACTGGGGCCTCTCCACA--GGACCCTTGGAGCTGGAGAGCAGGTA 222594 | | |||| ||||| ||| || | ||| ||| || | | || ||| ||||| Sbjct 1165186 A-CGCATGATCATGTGCTGAGGGCGCTCGACAATCTTACCGTCAATCT--TGAGGAGGTA 1165242 Query 222595 CGATTTTTCCAGAGTCTTGAACCCAAAGTA 222624 ||| |||| ||||||||| |||||||| Sbjct 1165243 TGATCGCTCCAAAGTCTTGAAGCCAAAGTA 1165272 Score = 87.8 bits (96), Expect = 3e-12 Identities = 128/181 (71%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 221116 GTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGG 221175 ||| || || ||||| || || | ||| || | | ||||| | ||| || ||| | || Sbjct 1163788 GTTGACAACCTGGAACTCACCAGCGAGAACACGTCGTTGGTAGATGTTGGAGGTGTAGGG 1163847 Query 221176 TTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCAC 221235 |||| || ||||||||||||||| ||||| | || ||||| || ||||| || || | Sbjct 1163848 CTCGAAGCACTCGTTGTTGCCCAGAATCTGGGAGGTACTGGCAGTAGGCATAGGAGCAAG 1163907 Query 221236 CAGCAGACTGTTGCGCAGTCCGAATCTATTGATGGACTTTCTCAGCGTGTTCCAGTCACA 221295 ||||||||||| || | ||| | | |||| || || || || | |||||| || Sbjct 1163908 GAGCAGACTGTTACGGATGCCGTGTGTCTTGACTTCCTCTCGAAGAGTCTCCCAGTCCCA 1163967 Query 221296 G 221296 | Sbjct 1163968 G 1163968 >seq3041 Length=162509 Score = 181 bits (200), Expect = 2e-40 Identities = 392/584 (67%), Gaps = 7/584 (1%) Strand=Plus/Minus Query 25463 TAACACACAAAGATATAT--GGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGC 25520 ||||| || | |||| || || | ||||||||||||||| | || |||||| || Sbjct 155462 TAACAGACCATGATAGATTTGGCAAATGTACAAGAAGGCTGAGGCTTCCTTCTGGACTGC 155403 Query 25521 CGAAGAGATTGATCTGGCCAAGGACATGGACGGCTGGTAC----GCTCTATCCAAAGACG 25576 || ||||||||||| ||||||| | | | |||| || || || | || | Sbjct 155402 TGAGGAGATTGATCTTTCCAAGGATCTCCATGACTGGAACAACCGC-CTGACTGCCGATG 155344 Query 25577 AGCAGCATTTTCTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACG 25636 ||||| || || || | | || || || || |||||||||||||| || |||| Sbjct 155343 AGCAGTTCTTCGTCTCTCACATCCTTGCTTTTTTCGCTGCCTCTGATGGTATTGTCAACG 155284 Query 25637 AGAATCTGTGCGAGAGATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACG 25696 |||| || |||| |||||| | || || ||| | ||||| || ||||||| Sbjct 155283 AGAACCTCGTCGAGCGATTCAGTGGCGAGGTCCAGATCCCCGAGGCTCGTTGCTTCTACG 155224 Query 25697 GTTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGT 25756 | |||||||| || || || | ||||| ||| || || ||| | || | Sbjct 155223 GCTTCCAGATCATGATGGAGAACATCCACTCCGAGACCTACTCCCTGCTCATTGACACCT 155164 Query 25757 ACATTACAGACGTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCA 25816 |||| | || |||| || || || ||| ||||| ||| ||| ||| ||| Sbjct 155163 ACATCAAGGAGCCCGCCCAGCGAACCTACCTCTTTAACGCCATTGAGACCATCCCCTGCA 155104 Query 25817 TCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCG 25876 || | |||||| |||||||| |||||| | || | | | |||| | Sbjct 155103 TCCGAAAGAAGGCCGACTGGGCCATCCGATGGATCCAGGATAAGGACTCCTCCTTTGCCC 155044 Query 25877 AGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCA 25936 |||| || || || || |||||||| ||||| ||||| ||||| ||| | || || | | Sbjct 155043 AGCGTCTCGTTGCTTTCGCTGCTGTTGAGGGTATCTTCTTCAGTGGTGCCTTCGCCTCTA 154984 Query 25937 TCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCA 25996 |||||||||||||| || || ||||||||| ||| ||| ||||||||||||||| Sbjct 154983 TCTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGTCTGACCTTCTCCAACGAGCTCATCT 154924 Query 25997 GCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTAC 26040 | || |||||||| |||| || ||||||||||| ||| || Sbjct 154923 CTCGTGATGAGGGTCTTCACACTGACTTTGCCTGCCTCCTCCAC 154880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928803501238080