Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702615
.1_202016-08-10] 3,557 sequences; 56,803,069 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq944 129 7e-24
seq2893 127 2e-23
seq3041 120 4e-21
>seq944
Length=943179
Score = 129 bits (142), Expect = 7e-24
Identities = 95/111 (86%), Gaps = 0/111 (0%)
Strand=Plus/Minus
Query 1592190 CCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGA 1592249
||||||||||||||||||||||||| || ||| | || |||||| |||| || |||||||
Sbjct 838401 CCAACTACCTCGACATCAAGCCTCTTCTTGATGTCGGCTGCAAGACTGTTGCAAACATGA 838342
Query 1592250 TCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAGTACG 1592300
||||||||||||| || || |||||||||||||| || ||||| | | |||
Sbjct 838341 TCAAGGGCAAGTCTCCTGAAGAGATCCGCAAGACTTTCAACATTACGAACG 838291
>seq2893
Length=1271672
Score = 127 bits (140), Expect = 2e-23
Identities = 183/258 (71%), Gaps = 0/258 (0%)
Strand=Plus/Plus
Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124
||||||||| ||||| || |||| ||| ||||| || ||||| || || | ||||| ||
Sbjct 1164841 CTGGTCGACATAGCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAACACCGTTCGA 1164900
Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184
|||||||| || || | |||| ||| | || || | |||| || | ||
Sbjct 1164901 TGTACCGTTGGTACCGGCGATATAGGAGCCAGTAGCACGGATACGGTGCACGTTCAGACC 1164960
Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244
|| || || ||| ||||||||| | || || ||||| || |||||||| |||||
Sbjct 1164961 AATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCGTAGATTCCCTC 1165020
Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304
|| |||| ||||||| || || | ||||| || || ||| || || | |||||
Sbjct 1165021 AATACTGTCGTCCTTCATATCAACCAAGAAGCAAGATGACAATTGGGGCTGAGGGGTGCC 1165080
Query 1630305 GGCGTTGAAGAGCGTGGG 1630322
||||||||||||||||||
Sbjct 1165081 GGCGTTGAAGAGCGTGGG 1165098
>seq3041
Length=162509
Score = 120 bits (132), Expect = 4e-21
Identities = 201/286 (70%), Gaps = 5/286 (2%)
Strand=Plus/Plus
Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238
||| || || ||| ||| | |||||| |||| || ||||||||||| || |||||
Sbjct 154910 ACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCGGGCATGAGACCACGCTT 154969
Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298
||||||||| ||||| | | ||| || ||| ||||| ||||| || || || ||
Sbjct 154970 CTTGAGCCAGAAGATAGAGGCGAAGGCACCACTGAAGAAGATACCCTCAACAGCAGCGAA 155029
Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCA 869358
| | ||| |||| |||||||| | || | ||| | | |||||| || |||||
Sbjct 155030 AGCAACGAGACGCTGGGCAAAGGAG--GA-GTCCTTATCCTGGATCCATCGGATGGCCCA 155086
Query 869359 GTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGT-GGTCCTTTT 869417
||||||||| || | | | || | || || |||||| |||||||| ||| | |
Sbjct 155087 GTCGGCCTTCTTTCGGATGCAGGGGATGGTCTCAATGGCGTTAAAGAGGTAGGTTC-GCT 155145
Query 869418 CGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTC 869463
||| || ||||||| |||||||| || || || || ||||||||
Sbjct 155146 GGGCGGGCTCCTTGATGTAGGTGTCAATGAGCAGGGAGTAGGTCTC 155191
Score = 100 bits (110), Expect = 3e-15
Identities = 162/233 (70%), Gaps = 0/233 (0%)
Strand=Plus/Plus
Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750
||||| ||| ||| | || ||| |||||| |||||||||||||| | || |||||
Sbjct 154596 GCCTTCTGGTAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCACCAAGGGAGATG 154655
Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810
|||||| | ||| ||||||| | |||||| ||| ||| || |||| |
Sbjct 154656 TTCTCCATGAAGTCGAAGGGGTTGGTGGCCTTGTAAACCTTCTCGTTGCCAAGCGCGACA 154715
Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870
|| || || || ||||| ||||| |||||||| ||||||| | | |||||||||||
Sbjct 154716 AGGAGACGATCAGCGACGAACTCAATGTACTGCTTCATGAGGTCAGAGTTCATGCCGAGA 154775
Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTC 868923
|| || || || | ||| | | ||||| | ||| ||| |||||| ||
Sbjct 154776 AGGGCACAGGGAAGAGCCTCAGTGAGGAACTCCTGCTCAATCGTGACGGCATC 154828
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6106847295922569
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |