Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702615
.1_202016-08-10] 3,557 sequences; 56,803,069 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq3041 154 2e-31
seq2893 127 3e-23
seq944 111 2e-18
seq1333 98.7 2e-14
seq1256 86.0 1e-10
>seq3041
Length=162509
Score = 154 bits (170), Expect = 2e-31
Identities = 233/328 (71%), Gaps = 5/328 (2%)
Strand=Plus/Plus
Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399
||| || || ||| ||| | |||||| ||| || ||||||||||| || |||||
Sbjct 154910 ACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCGGGCATGAGACCACGCTT 154969
Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459
||||||||| ||||| | ||| || ||| ||||| ||||| || || || ||
Sbjct 154970 CTTGAGCCAGAAGATAGAGGCGAAGGCACCACTGAAGAAGATACCCTCAACAGCAGCGAA 155029
Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCA 794519
| ||||| |||| |||||| | | | ||| | | |||||| || |||||
Sbjct 155030 AGCAACGAGACGCTGGGCAAAGGAGGA---GTCCTTATCCTGGATCCATCGGATGGCCCA 155086
Query 794520 CTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGT-GGTCCTTCT 794578
|| ||||| || | | |||| | || || |||||| |||||||| ||| | ||
Sbjct 155087 GTCGGCCTTCTTTCGGATGCAGGGGATGGTCTCAATGGCGTTAAAGAGGTAGGTTCG-CT 155145
Query 794579 CGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTT 794638
| | || ||||||| ||||||||| ||||| || ||||||||||| ||||||||||| |
Sbjct 155146 GGGCGGGCTCCTTGATGTAGGTGTCAATGAGCAGGGAGTAGGTCTCGGAGTGGATGTTCT 155205
Query 794639 CGATGGCGATCTGGAAGCCATAAAAGCA 794666
| || |||||||||||| || |||||
Sbjct 155206 CCATCATGATCTGGAAGCCGTAGAAGCA 155233
Score = 118 bits (130), Expect = 2e-20
Identities = 181/257 (70%), Gaps = 1/257 (0%)
Strand=Plus/Plus
Query 793892 GACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAG 793951
||| || ||||| || ||| | || ||| |||||| |||||||||||||| | ||
Sbjct 154589 GACACCGGCCTTCTGGTAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCACCAAG 154648
Query 793952 CGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGAG 794011
||||| |||||| | ||| ||||||| | | ||| ||||||| || ||
Sbjct 154649 GGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTGGCCTTGTAAACCTTCTCGTTGCCAAG 154708
Query 794012 CGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCAT 794071
|| |||| || || || |||||||| ||||||||||| ||||||| | | ||||||
Sbjct 154709 CGCGACAAGGAGACGATCAGCGACGAACTCAATGTACTGCTTCATGAGGTCAGAGTTCAT 154768
Query 794072 GCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTC 794131
||||| || || ||| || | ||| ||| ||||| | ||| ||| |||||| ||
Sbjct 154769 GCCGAGAAGGGCACAGGGAAGAGCCTCAGTGAGGAACTCCTGCTCAATCGTGACGGCATC 154828
Query 794132 GATGATGATCTGCCTGG 794148
| ||||| | |||||
Sbjct 154829 AGTAATGATAT-CCTGG 154844
>seq2893
Length=1271672
Score = 127 bits (140), Expect = 3e-23
Identities = 183/258 (71%), Gaps = 0/258 (0%)
Strand=Plus/Plus
Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599
||||||||||||||| || |||| ||| ||||| || ||||| || |||| ||||| ||
Sbjct 1164841 CTGGTCGACATAGCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAACACCGTTCGA 1164900
Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659
|||||||| || || | |||| ||| | || || | |||| || | ||
Sbjct 1164901 TGTACCGTTGGTACCGGCGATATAGGAGCCAGTAGCACGGATACGGTGCACGTTCAGACC 1164960
Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719
|| || || ||| ||||||||| | || || | || || || |||||||| |||||
Sbjct 1164961 AATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCGTAGATTCCCTC 1165020
Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779
|| |||| ||||||| || | || ||||| || || ||| || | | |||||
Sbjct 1165021 AATACTGTCGTCCTTCATATCAACCAAGAAGCAAGATGACAATTGGGGCTGAGGGGTGCC 1165080
Query 2073780 GGCATTGAAGAGCGTGGG 2073797
||| ||||||||||||||
Sbjct 1165081 GGCGTTGAAGAGCGTGGG 1165098
>seq944
Length=943179
Score = 111 bits (122), Expect = 2e-18
Identities = 91/111 (82%), Gaps = 0/111 (0%)
Strand=Plus/Minus
Query 2035651 CCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTA 2035710
|||||||||||||||||||||| || || ||| | || |||||||| || || ||| | |
Sbjct 838401 CCAACTACCTCGACATCAAGCCTCTTCTTGATGTCGGCTGCAAGACTGTTGCAAACATGA 838342
Query 2035711 TCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCAAGTACG 2035761
||||||||||||| || || || ||||||||||| || ||||| | | |||
Sbjct 838341 TCAAGGGCAAGTCTCCTGAAGAGATCCGCAAGACTTTCAACATTACGAACG 838291
>seq1333
Length=767321
Score = 98.7 bits (108), Expect = 2e-14
Identities = 77/92 (84%), Gaps = 0/92 (0%)
Strand=Plus/Plus
Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530
|||||||||||| |||||||||||||| |||||||||||| |||| || || ||| | |
Sbjct 671483 GTACTTGGTGACAGCCTTGGTACCCTCAGAGACGGCGTGCTTGGCAAGCTCACCGGGGAG 671542
Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGG 1485562
||| ||||| || | ||||||||||| ||||
Sbjct 671543 GATGAGGCGGACAGAAGTCTGGATCTCTCGGG 671574
>seq1256
Length=447211
Score = 86.0 bits (94), Expect = 1e-10
Identities = 118/165 (72%), Gaps = 0/165 (0%)
Strand=Plus/Minus
Query 2019204 GGCCGCCACAAGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTCGGCGGCCCAGCAG 2019263
|| ||||| || | | ||||||||||| |||||| || | || |||| || |||||
Sbjct 92104 GGGCGCCATAAACTTGTTATCCTCGATGAAGCCGACAGCATGACTTCGGGTGCTCAGCAA 92045
Query 2019264 GCCCTCCGATCGACCATGGAAAAGTACACCAACACGACGCGGTTTGCGCTGGCCTGCAAC 2019323
||||| || || ||||| | ||| ||||||| || || || || | |||||||||
Sbjct 92044 GCCCTTAGACGAACTATGGAGATCTACTCCAACACTACACGATTCGCTTTTGCCTGCAAC 91985
Query 2019324 ACGTCGTCGATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCATC 2019368
||| | | |||||||| ||||||| || |||||||||
Sbjct 91984 CAGTCCAACAAGATCATCGAACCCCTCCAATCACGATGCGCCATC 91940
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7915868025686523
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |