Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702615 .1_202016-08-10] 3,557 sequences; 56,803,069 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq2893 251 7e-62 seq579 140 3e-28 seq102 127 2e-24 seq3046 104 2e-17 >seq2893 Length=1271672 Score = 251 bits (278), Expect = 7e-62 Identities = 1014/1570 (65%), Gaps = 49/1570 (3%) Strand=Plus/Plus Query 148233 TCGATCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGC 148292 |||| ||||| | || ||| | | || || ||||| ||||| || ||||| || || Sbjct 1163762 TCGACAAGGTCCTTGAGCAGCCAGGGGTTGACAACCTGGAACTCACCAGCGAGAACACGT 1163821 Query 148293 CGCAGATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCG 148352 || | || | |||| || | || || || ||||||||||||||| |||||| | | Sbjct 1163822 CGTTGGTAGATGTTGGAGGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGGGAG 1163881 Query 148353 GTCGTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATT 148412 || | || || ||||| || | ||||| ||| || | ||| | | | || Sbjct 1163882 GTACTGGCAGTAGGCATAGGAGCAAGGAGCAGACTGTTACGGATGCCGTG-TGTCTTGAC 1163940 Query 148413 TTGCGCT-TCAGAGCCGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGTCGTA 148471 || | || |||| | ||||||||||||| || || | ||||||||||||||| | Sbjct 1163941 TTCCTCTCGAAGAGTCTCCCAGTCCCAGAGGTCAGAGGGCTTGACGTTCCACATGTCGAA 1164000 Query 148472 CTGCAGAATGCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGC 148531 ||| || || || |||||| || | | | | | ||| || || | | || Sbjct 1164001 CTGGAGGATACCCTCAGAGGCGGGGGAACCTTTGAAGGTGGAGTAGGGACCCTCCTCCTT 1164060 Query 148532 CGCCAGTTCGCA-GCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGT 148590 ||||| | ||| | || ||| || ||| |||||| |||||| || ||| ||| Sbjct 1164061 AGCCAGCT-GCACGGAGGCAGTGAGGGCAGCGTGGTAAATGGTCTCGAAGATCTGCTTGT 1164119 Query 148591 TGAGC---AGCGCCGCCGACTCGCTTTCGTACGGCATACGCAGCCGCACAAACGCGTCGG 148647 ||||| | ||| || | | ||| | ||||| ||||| | || || |||| Sbjct 1164120 TGAGCTCACGAGCC-TCGGGTGAC--TCGAAGGGCATGCGCAGAGCAAGGAAAGCATCGG 1164176 Query 148648 CAAGGCCCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCT 148707 |||||||||| || || | |||||||| ||||| ||||| | ||| || || Sbjct 1164177 CAAGGCCCTGAACACCAAGACCAATGGGTCGGTGGCGCATGTTACTGTTGCGAGCCTCCT 1164236 Query 148708 CGAGCGGATAGTGGTTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACCTTTGTAA 148767 || || |||||||| ||||||||||||| || ||||| | || |||| | | Sbjct 1164237 GGACAGGGTAGTGGTTCACATCGATGATCTTGTTCAGGTTGCGAATAACAACCTGACTGA 1164296 Query 148768 TTCTGCGCAGCAATTCAAAATCGTA-CTTG--TCATC-TA--CGATGCATCGGTTCACGG 148821 || ||| | | || ||||| | | ||||| || |||| | | || | Sbjct 1164297 CCTTGTGCAACTTCTTGAAGTCGTAGCAAGCCTCATCGTAGTTGATGAAAGAGGGCAGAG 1164356 Query 148822 CGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGG 148881 | | |||||| || ||||| || || ||| || ||||| | |||||| | || || | Sbjct 1164357 CCAGAGAGGCAAGGTTGCAGACAGCGACCTCGTCAGGGGCACAGTACTCAATAATTTCAG 1164416 Query 148882 CGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACG 148941 |||||| ||| || | ||| || | ||||||||| |||||||||| |||||| | Sbjct 1164417 TGCACAGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGG 1164476 Query 148942 CGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTAT---GAACC 148998 | |||||||| |||||| | || || || || ||| | || | || | ||| Sbjct 1164477 CATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCCTCAAGAATGGCGTACC 1164536 Query 148999 GATGCAGGTCCTGCGCGCGCACTTGCTGCTCGTAGCGA------CCCTCCTGCTCGTA-- 149050 | || | ||| || |||| | || | |||| ||||||| |||||| Sbjct 1164537 AA---AGTTTCTGAGC-----CTTGATAGTC-TTGCGACCCTTGCCCTCCTTCTCGTACT 1164587 Query 149051 TAAAGTATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTG 149110 | ||| | ||| ||||||| |||| |||||||| ||| |||| || ||||||| || Sbjct 1164588 TTTCGTACAGAGC--CTCGAACTCCTCTCCGTAGCAGTCGGCGAGGCCAGGGCACTCGTT 1164645 Query 149111 CGGGCACATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCAC 149170 |||||||| |||| ||| |||||| | | || |||||||| || ||||| || | Sbjct 1164646 GGGGCACATCAGCGTCCAGTCGCCGTTCTTTTCAACACGCTTCATGAAAAGATCAGGGAT 1164705 Query 149171 CCAGAGCGCGTACATGAGGTCGCGCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAG 149230 ||| || ||| | ||||| || || | || || || ||| || || Sbjct 1164706 CCAAAGGGCGAGGAAAAGGTCACGGGCACGGACCTCCTCTTTACCGTGGTTCTTACGGAG 1164765 Query 149231 GTTGAGCACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTT 149290 | || | ||| | || | |||||| ||||| | ||| | || | || || Sbjct 1164766 ATCAAGGAACTCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGG 1164825 Query 149291 GCGC---TTGCCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGG 149347 ||| ||||| ||||||||||| | ||| | ||||||| || || |||| |||||| Sbjct 1164826 TCGCTTGTTGCCACCCTGGTCGACATAGCGAGCAGTGTTGTTGAAGACACGAAGCATAGG 1164885 Query 149348 TTCAATGCCACTGGCAGTGCCGTTAGTA-GAGCTA-ATGCGACTGCCGCGCGCTCGCACT 149405 ||| || | | || ||||| ||| || | || || ||| || || | Sbjct 1164886 AACAACACCGTTCGATGTACCGTTGGTACCGGCGATATAGGA--GCCAGTAGCACGGATA 1164943 Query 149406 TTGTGCACGTTGACGCCGATGCCGCC-GCCGTACTTTGAGATGGCCGCGCAGTCGCCGAG 149464 ||||||||| | || || || || ||| | ||| ||||| || ||| ||| Sbjct 1164944 CGGTGCACGTTCAGACCAATACCACCAGCCAT-CTTGGAGATCATGGCACAGGTCTTGAG 1165002 Query 149465 CGTCGAGTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACAT 149524 || |||||| ||||| || |||||| |||||| | || ||||| || ||| Sbjct 1165003 AGTATCGTAGATTCCCTCAATACTGTCGTCCTTCATATCAACCAAGAAGCAAGATGACAA 1165062 Query 149525 TTGCGGAAAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATTT-CT 149583 ||| || | | |||||||| ||| | ||||| ||| ||||| || |||| || Sbjct 1165063 TTGGGGCTGAGGGGTGCCGGCGTTGAAGAGCGTGGGAGAGGCATGTGTGAAGAATTTGCT 1165122 Query 149584 GGCTCATCATCTCGTACGACTCGAGCACGCGGTCCATGTCATCGCCATGGATGCCTATGG 149643 || ||||| | ||| | ||| | || || || || ||||| || || || | | Sbjct 1165123 GG-ACATCAGGTTGTATGTCTCCAAGACTCGCTCGATATCATCACCCCAAATACCAACAG 1165181 Query 149644 CGACGCGCATCAGCATATGCTGCGGTCGCTCCGCCACTTTGTTTCCAATTTTGAGCAAGT 149703 || ||||| | ||| ||||| || ||||| | | || |||| ||||| | || Sbjct 1165182 ACACACGCATGATCATGTGCTGAGGGCGCTCGACAATCTTACCGTCAATCTTGAGGAGGT 1165241 Query 149704 AGCCGTTTTCTAGTGTCTTGTAGCCAAAGTACTTGTAGTCAAAGTCGCGGCCGTGGTCAA 149763 | || | |||||| |||||||||| | ||| | || |||||| | | | ||| Sbjct 1165242 ATGATCGCTCCAAAGTCTTGAAGCCAAAGTATTGGTATTGGAAATCGCGGTCATAGACAA 1165301 Query 149764 TGGCGGCGTC 149773 |||| | ||| Sbjct 1165302 TGGCAGAGTC 1165311 >seq579 Length=310369 Score = 140 bits (154), Expect = 3e-28 Identities = 152/199 (76%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || ||||| |||| || ||| | | | |||||||||||||||| Sbjct 279233 GGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGTCCA-TCCTCGAGCTGCTTGC 279291 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | ||||| ||||||||||| || |||||||| |||||||| |||||| || Sbjct 279292 CAGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACT 279351 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | || | ||||||| | |||||| || | ||||| || || || || || | Sbjct 279352 TGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGG 279411 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || |||||||||||||| Sbjct 279412 TCTTGACGAAAATCTGCAT 279430 >seq102 Length=1299131 Score = 127 bits (140), Expect = 2e-24 Identities = 147/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||| ||||| || |||||||| | ||| |||||| ||||||||||| Sbjct 987474 GTGGACTCCTTCTGAATGTTGTAATCAGAGAGAGTGCGGCCGTCCTCAAGCTGCTTGCCG 987415 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| |||| | || ||||||||||| || ||||| |||||||| ||||| |||| Sbjct 987414 GCGAAAATCAAGCGTTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTTG 987355 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | || | ||||||| | ||| || |||| ||||| ||| |||||||||| || Sbjct 987354 ACATTGTCGATAGTGTCGGAAGACTCAACCTCGAGGGTGATGGTCTTGCCGGTCAAGGTC 987295 Query 133644 TTTACGAAAATCTGCATG 133661 || ||||| ||||||||| Sbjct 987294 TTGACGAAGATCTGCATG 987277 Score = 98.7 bits (108), Expect = 1e-15 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || ||||| |||| || ||| ||| | || || | |||||| || Sbjct 988212 GTTGACTCCTTCTGGATGTTGTAGTCGCTCAAGGTGCGACCA-TCTTCCAACTGCTTACC 988154 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || || ||||| || || || || || || |||||||| ||||| ||| Sbjct 988153 AGCGAAGATAAGACGCTGTTGATCAGGGGGAATACCCTCCTTGTCCTGAATCTTGCTCTT 988094 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | || | ||||| ||| ||| || || | ||||| ||| || ||||| ||||| Sbjct 988093 CACGTTGTCGATAGTGTCACTGGACTCGACCTCAAGGGTGATGGTCTTTCCGGTGAGAGT 988034 Query 133643 TTTTACGAAAATCTGCAT 133660 || || ||||||||||| Sbjct 988033 CTTCACAAAAATCTGCAT 988016 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||| || || ||||| || ||||| ||| | | || | | | || ||||| | Sbjct 987763 ATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCGGCAAGGGTTCGGCCA-TCTTCGAGTT 987705 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 |||| || || | || || ||||||||||| ||||||||||| |||||||| |||| Sbjct 987704 GCTTTCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGAATCT 987645 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 || ||| | | || | || |||| | ||| || || | ||||| ||| ||||| | Sbjct 987644 TTGACTTAACATTGTCGATGGTATCGGACGACTCGACCTCAAGGGTGATGGTCTTGCCAG 987585 Query 133636 TCAGAGTTTTTACGA 133650 | || || || |||| Sbjct 987584 TGAGGGTCTTGACGA 987570 >seq3046 Length=363889 Score = 104 bits (114), Expect = 2e-17 Identities = 111/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 |||||||||||||| || ||| | || || ||||| ||||| || || ||||| |||||| Sbjct 198958 TCCTCGAGCTGCTTACCAGCGAAGATCAGTCGCTGTTGGTCCGGGGGAATGCCCTCCTTG 198899 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || |||||| ||||| | || | ||||| | || ||| || |||| ||||| | Sbjct 198898 TCCTGGATCTTGGACTTGACATTGTCGATGGTGTCCGAGGACTCGACCTCGAGGGTGATG 198839 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAA 133652 || ||||| ||||| || || |||||| Sbjct 198838 GTCTTGCCCGTCAGGGTCTTCACGAAA 198812 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483399305902680