Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702615
.1_202016-08-10] 3,557 sequences; 56,803,069 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq2893 251 7e-62
seq579 140 3e-28
seq102 127 2e-24
seq3046 104 2e-17
>seq2893
Length=1271672
Score = 251 bits (278), Expect = 7e-62
Identities = 1014/1570 (65%), Gaps = 49/1570 (3%)
Strand=Plus/Plus
Query 148233 TCGATCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGC 148292
|||| ||||| | || ||| | | || || ||||| ||||| || ||||| || ||
Sbjct 1163762 TCGACAAGGTCCTTGAGCAGCCAGGGGTTGACAACCTGGAACTCACCAGCGAGAACACGT 1163821
Query 148293 CGCAGATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCG 148352
|| | || | |||| || | || || || ||||||||||||||| |||||| | |
Sbjct 1163822 CGTTGGTAGATGTTGGAGGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGGGAG 1163881
Query 148353 GTCGTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATT 148412
|| | || || ||||| || | ||||| ||| || | ||| | | | ||
Sbjct 1163882 GTACTGGCAGTAGGCATAGGAGCAAGGAGCAGACTGTTACGGATGCCGTG-TGTCTTGAC 1163940
Query 148413 TTGCGCT-TCAGAGCCGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGTCGTA 148471
|| | || |||| | ||||||||||||| || || | ||||||||||||||| |
Sbjct 1163941 TTCCTCTCGAAGAGTCTCCCAGTCCCAGAGGTCAGAGGGCTTGACGTTCCACATGTCGAA 1164000
Query 148472 CTGCAGAATGCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGC 148531
||| || || || |||||| || | | | | | ||| || || | | ||
Sbjct 1164001 CTGGAGGATACCCTCAGAGGCGGGGGAACCTTTGAAGGTGGAGTAGGGACCCTCCTCCTT 1164060
Query 148532 CGCCAGTTCGCA-GCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGT 148590
||||| | ||| | || ||| || ||| |||||| |||||| || ||| |||
Sbjct 1164061 AGCCAGCT-GCACGGAGGCAGTGAGGGCAGCGTGGTAAATGGTCTCGAAGATCTGCTTGT 1164119
Query 148591 TGAGC---AGCGCCGCCGACTCGCTTTCGTACGGCATACGCAGCCGCACAAACGCGTCGG 148647
||||| | ||| || | | ||| | ||||| ||||| | || || ||||
Sbjct 1164120 TGAGCTCACGAGCC-TCGGGTGAC--TCGAAGGGCATGCGCAGAGCAAGGAAAGCATCGG 1164176
Query 148648 CAAGGCCCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCT 148707
|||||||||| || || | |||||||| ||||| ||||| | ||| || ||
Sbjct 1164177 CAAGGCCCTGAACACCAAGACCAATGGGTCGGTGGCGCATGTTACTGTTGCGAGCCTCCT 1164236
Query 148708 CGAGCGGATAGTGGTTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACCTTTGTAA 148767
|| || |||||||| ||||||||||||| || ||||| | || |||| | |
Sbjct 1164237 GGACAGGGTAGTGGTTCACATCGATGATCTTGTTCAGGTTGCGAATAACAACCTGACTGA 1164296
Query 148768 TTCTGCGCAGCAATTCAAAATCGTA-CTTG--TCATC-TA--CGATGCATCGGTTCACGG 148821
|| ||| | | || ||||| | | ||||| || |||| | | || |
Sbjct 1164297 CCTTGTGCAACTTCTTGAAGTCGTAGCAAGCCTCATCGTAGTTGATGAAAGAGGGCAGAG 1164356
Query 148822 CGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGG 148881
| | |||||| || ||||| || || ||| || ||||| | |||||| | || || |
Sbjct 1164357 CCAGAGAGGCAAGGTTGCAGACAGCGACCTCGTCAGGGGCACAGTACTCAATAATTTCAG 1164416
Query 148882 CGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACG 148941
|||||| ||| || | ||| || | ||||||||| |||||||||| |||||| |
Sbjct 1164417 TGCACAGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGG 1164476
Query 148942 CGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTAT---GAACC 148998
| |||||||| |||||| | || || || || ||| | || | || | |||
Sbjct 1164477 CATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCCTCAAGAATGGCGTACC 1164536
Query 148999 GATGCAGGTCCTGCGCGCGCACTTGCTGCTCGTAGCGA------CCCTCCTGCTCGTA-- 149050
| || | ||| || |||| | || | |||| ||||||| ||||||
Sbjct 1164537 AA---AGTTTCTGAGC-----CTTGATAGTC-TTGCGACCCTTGCCCTCCTTCTCGTACT 1164587
Query 149051 TAAAGTATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTG 149110
| ||| | ||| ||||||| |||| |||||||| ||| |||| || ||||||| ||
Sbjct 1164588 TTTCGTACAGAGC--CTCGAACTCCTCTCCGTAGCAGTCGGCGAGGCCAGGGCACTCGTT 1164645
Query 149111 CGGGCACATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCAC 149170
|||||||| |||| ||| |||||| | | || |||||||| || ||||| || |
Sbjct 1164646 GGGGCACATCAGCGTCCAGTCGCCGTTCTTTTCAACACGCTTCATGAAAAGATCAGGGAT 1164705
Query 149171 CCAGAGCGCGTACATGAGGTCGCGCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAG 149230
||| || ||| | ||||| || || | || || || ||| || ||
Sbjct 1164706 CCAAAGGGCGAGGAAAAGGTCACGGGCACGGACCTCCTCTTTACCGTGGTTCTTACGGAG 1164765
Query 149231 GTTGAGCACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTT 149290
| || | ||| | || | |||||| ||||| | ||| | || | || ||
Sbjct 1164766 ATCAAGGAACTCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGG 1164825
Query 149291 GCGC---TTGCCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGG 149347
||| ||||| ||||||||||| | ||| | ||||||| || || |||| ||||||
Sbjct 1164826 TCGCTTGTTGCCACCCTGGTCGACATAGCGAGCAGTGTTGTTGAAGACACGAAGCATAGG 1164885
Query 149348 TTCAATGCCACTGGCAGTGCCGTTAGTA-GAGCTA-ATGCGACTGCCGCGCGCTCGCACT 149405
||| || | | || ||||| ||| || | || || ||| || || |
Sbjct 1164886 AACAACACCGTTCGATGTACCGTTGGTACCGGCGATATAGGA--GCCAGTAGCACGGATA 1164943
Query 149406 TTGTGCACGTTGACGCCGATGCCGCC-GCCGTACTTTGAGATGGCCGCGCAGTCGCCGAG 149464
||||||||| | || || || || ||| | ||| ||||| || ||| |||
Sbjct 1164944 CGGTGCACGTTCAGACCAATACCACCAGCCAT-CTTGGAGATCATGGCACAGGTCTTGAG 1165002
Query 149465 CGTCGAGTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACAT 149524
|| |||||| ||||| || |||||| |||||| | || ||||| || |||
Sbjct 1165003 AGTATCGTAGATTCCCTCAATACTGTCGTCCTTCATATCAACCAAGAAGCAAGATGACAA 1165062
Query 149525 TTGCGGAAAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATTT-CT 149583
||| || | | |||||||| ||| | ||||| ||| ||||| || |||| ||
Sbjct 1165063 TTGGGGCTGAGGGGTGCCGGCGTTGAAGAGCGTGGGAGAGGCATGTGTGAAGAATTTGCT 1165122
Query 149584 GGCTCATCATCTCGTACGACTCGAGCACGCGGTCCATGTCATCGCCATGGATGCCTATGG 149643
|| ||||| | ||| | ||| | || || || || ||||| || || || | |
Sbjct 1165123 GG-ACATCAGGTTGTATGTCTCCAAGACTCGCTCGATATCATCACCCCAAATACCAACAG 1165181
Query 149644 CGACGCGCATCAGCATATGCTGCGGTCGCTCCGCCACTTTGTTTCCAATTTTGAGCAAGT 149703
|| ||||| | ||| ||||| || ||||| | | || |||| ||||| | ||
Sbjct 1165182 ACACACGCATGATCATGTGCTGAGGGCGCTCGACAATCTTACCGTCAATCTTGAGGAGGT 1165241
Query 149704 AGCCGTTTTCTAGTGTCTTGTAGCCAAAGTACTTGTAGTCAAAGTCGCGGCCGTGGTCAA 149763
| || | |||||| |||||||||| | ||| | || |||||| | | | |||
Sbjct 1165242 ATGATCGCTCCAAAGTCTTGAAGCCAAAGTATTGGTATTGGAAATCGCGGTCATAGACAA 1165301
Query 149764 TGGCGGCGTC 149773
|||| | |||
Sbjct 1165302 TGGCAGAGTC 1165311
>seq579
Length=310369
Score = 140 bits (154), Expect = 3e-28
Identities = 152/199 (76%), Gaps = 2/199 (1%)
Strand=Plus/Plus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521
||||||||| ||||| || ||||| |||| || ||| | | | ||||||||||||||||
Sbjct 279233 GGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGTCCA-TCCTCGAGCTGCTTGC 279291
Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581
| || | ||||| ||||||||||| || |||||||| |||||||| |||||| ||
Sbjct 279292 CAGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACT 279351
Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641
||| | || | ||||||| | |||||| || | ||||| || || || || || |
Sbjct 279352 TGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGG 279411
Query 133642 TTTTTACGAAAATCTGCAT 133660
| || ||||||||||||||
Sbjct 279412 TCTTGACGAAAATCTGCAT 279430
>seq102
Length=1299131
Score = 127 bits (140), Expect = 2e-24
Identities = 147/198 (74%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523
|||||||| ||||| || |||||||| | ||| |||||| |||||||||||
Sbjct 987474 GTGGACTCCTTCTGAATGTTGTAATCAGAGAGAGTGCGGCCGTCCTCAAGCTGCTTGCCG 987415
Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583
||| |||| | || ||||||||||| || ||||| |||||||| ||||| ||||
Sbjct 987414 GCGAAAATCAAGCGTTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTTG 987355
Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643
| | || | ||||||| | ||| || |||| ||||| ||| |||||||||| ||
Sbjct 987354 ACATTGTCGATAGTGTCGGAAGACTCAACCTCGAGGGTGATGGTCTTGCCGGTCAAGGTC 987295
Query 133644 TTTACGAAAATCTGCATG 133661
|| ||||| |||||||||
Sbjct 987294 TTGACGAAGATCTGCATG 987277
Score = 98.7 bits (108), Expect = 1e-15
Identities = 142/198 (72%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522
|| ||||| ||||| || ||||| |||| || ||| ||| | || || | |||||| ||
Sbjct 988212 GTTGACTCCTTCTGGATGTTGTAGTCGCTCAAGGTGCGACCA-TCTTCCAACTGCTTACC 988154
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
||| | || || ||||| || || || || || || |||||||| ||||| |||
Sbjct 988153 AGCGAAGATAAGACGCTGTTGATCAGGGGGAATACCCTCCTTGTCCTGAATCTTGCTCTT 988094
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642
| | || | ||||| ||| ||| || || | ||||| ||| || ||||| |||||
Sbjct 988093 CACGTTGTCGATAGTGTCACTGGACTCGACCTCAAGGGTGATGGTCTTTCCGGTGAGAGT 988034
Query 133643 TTTTACGAAAATCTGCAT 133660
|| || |||||||||||
Sbjct 988033 CTTCACAAAAATCTGCAT 988016
Score = 87.8 bits (96), Expect = 2e-12
Identities = 138/195 (71%), Gaps = 2/195 (1%)
Strand=Plus/Minus
Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515
||| | ||| || || ||||| || ||||| ||| | | || | | | || ||||| |
Sbjct 987763 ATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCGGCAAGGGTTCGGCCA-TCTTCGAGTT 987705
Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575
|||| || || | || || ||||||||||| ||||||||||| |||||||| ||||
Sbjct 987704 GCTTTCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGAATCT 987645
Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635
|| ||| | | || | || |||| | ||| || || | ||||| ||| ||||| |
Sbjct 987644 TTGACTTAACATTGTCGATGGTATCGGACGACTCGACCTCAAGGGTGATGGTCTTGCCAG 987585
Query 133636 TCAGAGTTTTTACGA 133650
| || || || ||||
Sbjct 987584 TGAGGGTCTTGACGA 987570
>seq3046
Length=363889
Score = 104 bits (114), Expect = 2e-17
Identities = 111/147 (76%), Gaps = 0/147 (0%)
Strand=Plus/Minus
Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565
|||||||||||||| || ||| | || || ||||| ||||| || || ||||| ||||||
Sbjct 198958 TCCTCGAGCTGCTTACCAGCGAAGATCAGTCGCTGTTGGTCCGGGGGAATGCCCTCCTTG 198899
Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625
|| |||||| ||||| | || | ||||| | || ||| || |||| ||||| |
Sbjct 198898 TCCTGGATCTTGGACTTGACATTGTCGATGGTGTCCGAGGACTCGACCTCGAGGGTGATG 198839
Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAA 133652
|| ||||| ||||| || || ||||||
Sbjct 198838 GTCTTGCCCGTCAGGGTCTTCACGAAA 198812
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 483399305902680
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