Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702615
.1_202016-08-10] 3,557 sequences; 56,803,069 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq3041 196 7e-44
seq2893 114 2e-19
>seq3041
Length=162509
Score = 196 bits (216), Expect = 7e-44
Identities = 356/507 (70%), Gaps = 12/507 (2%)
Strand=Plus/Minus
Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834
||| ||| |||||||| || ||||| ||||| ||||| ||||| || |||||| | || |
Sbjct 155447 GATTTGGCAAATGTAC-AAGAAGGCTGAGGCTTCCTTCTGGACTGCTGAGGAGATTGATC 155389
Query 1455835 TCGGCGCCGA-CACGGTCCACTGGGTGT--CGC-TGAGCGACGACGAGCGCCATTTCATC 1455890
| | || | | | ||||| ||| ||| | ||| |||| ||| ||
Sbjct 155388 TTTCCAAGGATCTCCATG-ACTGGAACAACCGCCTGACTGCCGATGAGCAGTTCTTCGTC 155330
Query 1455891 AAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGG 1455950
||| |||| || ||||||||| ||| ||||| || || ||||||||| | ||
Sbjct 155329 TCTCACATCCTTGC-TTTTTTCGCTGCCTCTGATGGTATTGTCAACGAGAACCTCGTCGA 155271
Query 1455951 CCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGC 1456010
|| || | |||||||| | || ||||| |||| || ||||| |||||||||
Sbjct 155270 GCGATTCAGTGGCGAGGTCCAGATCCCCGAGGCTCGTTGCTTCTACGGCTTCCAGATCAT 155211
Query 1456011 CATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCC 1456070
|| || ||||||||||| || |||||||| || || || ||||||||| ||||||| ||
Sbjct 155210 GATGGAGAACATCCACTCCGAGACCTACTCCCTGCTCATTGACACCTACATCAAGGAGCC 155151
Query 1456071 GGTCGAGAAGGACC-ACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGG 1456129
| | || | ||| |||||||| |||||| || || | || | | | || ||||
Sbjct 155150 CGCCCAGC-GAACCTACCTCTTTAACGCCATTGAGACCATCCCCTGCATCCGAAAGAAGG 155092
Query 1456130 CCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGT 1456189
|||||||||| || |||||| | | | || ||| | ||||||| |||| |||||
Sbjct 155091 CCGACTGGGCCATCCGATGGATCCAGGA-TAAGGACTCCTC-CTTTGCCCAGCGTCTCGT 155034
Query 1456190 CGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCT 1456248
| || || || || ||||| ||||| ||| || ||| | | ||||| |||||
Sbjct 155033 TGCTTTCGCTGCTGTTGAGGGTATCTTCTTCAGTGGTGCCTTCGCCTCTATCTTCTGGCT 154974
Query 1456249 CAAGAAGCGCGGCCTCATGCCCGGTCT 1456275
||||||||| || ||||||||||||||
Sbjct 154973 CAAGAAGCGTGGTCTCATGCCCGGTCT 154947
Score = 86.0 bits (94), Expect = 9e-11
Identities = 168/243 (69%), Gaps = 4/243 (2%)
Strand=Plus/Minus
Query 1456532 GAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCGCTCATCGGC 1456591
|| |||||| ||| ||| | ||||| ||| ||| | || || || || |||||
Sbjct 154828 GATGCCGTCACGATTGAGCAGGAGTTCCTCACTGAGGCTCTTCCCTGTGCCCTTCTCGGC 154769
Query 1456592 ATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCCTGCTCGCGG 1456651
|||||| | | |||||| ||||||||||| || ||||| || || || || | |
Sbjct 154768 ATGAACTCTGAC-CTCATGAAGCAGTACATTGAGTTC-GTCGCTGATCGTCTCCTTGTCG 154711
Query 1456652 CGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATGGAGTTGATC 1456711
|||| ||| || ||||| ||| | | ||||||| ||| | |||||| |||
Sbjct 154710 CGCTTGGCAACG-AGAAGGTTTACAAGGCCACCAACCCCTTCGACTTCATGGAGAACATC 154652
Query 1456712 TCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCG-TGGCGAGTACGCCAAGGCCGGC 1456770
|| || | |||||||||||||| |||||| || | || ||| ||| ||||||||
Sbjct 154651 TCCCTTGGTGGCAAGACCAACTTCTTCGAGAAGCGTGTTGCCGACTACCAGAAGGCCGGT 154592
Query 1456771 GTC 1456773
|||
Sbjct 154591 GTC 154589
>seq2893
Length=1271672
Score = 114 bits (126), Expect = 2e-19
Identities = 180/258 (70%), Gaps = 0/258 (0%)
Strand=Plus/Minus
Query 259925 CCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGGAC 259984
||||||||||| || |||||||| || | || || || || ||||| || | ||
Sbjct 1165098 CCCACGCTCTTCAACGCCGGCACCCCTCAGCCCCAATTGTCATCTTGCTTCTTGGTTGAT 1165039
Query 259985 ATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTCC 260044
||||||| ||| || ||||| ||||| || || |||||| || || | ||||||
Sbjct 1165038 ATGAAGGACGACAGTATTGAGGGAATCTACGATACTCTCAAGACCTGTGCCATGATCTCC 1164979
Query 260045 AAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTACGTG 260104
||| ||| || || || ||| | || ||| | || || | ||| |||| |
Sbjct 1164978 AAGATGGCTGGTGGTATTGGTCTGAACGTGCACCGTATCCGTGCTACTGGCTCCTATATC 1164919
Query 260105 GCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACACG 260164
|| || |||||||| || ||||| |||| || |||||||| || || ||| ||||
Sbjct 1164918 GCCGGTACCAACGGTACATCGAACGGTGTTGTTCCTATGCTTCGTGTCTTCAACAACACT 1164859
Query 260165 GCGCGCTACGTCGACCAG 260182
|| ||||| |||||||||
Sbjct 1164858 GCTCGCTATGTCGACCAG 1164841
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7177468120812234
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |